Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0523
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   3.4  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   4.6  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   4.6  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   6.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.0  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 61  LQKLQRRHCIKHTNSGQPNRCQKWMKKLL 147
           + +L R+    H NS +      W+ KL+
Sbjct: 578 IYELARKAAFAHLNSNEARATLNWVSKLI 606


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 372 SNQVVVEPISKNQFGNQNETYNHHLPH 292
           +N  +     KNQ   QN T+N+ + H
Sbjct: 21  TNPFLASDCDKNQNTEQNYTHNNEMYH 47


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 372 SNQVVVEPISKNQFGNQNETYNHHLPH 292
           +N  +     KNQ   QN T+N+ + H
Sbjct: 21  TNPFLASDCDKNQNTEQNYTHNNEMYH 47


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 413 SRFHHTNTTMPFHFP 369
           S FH   T++P H+P
Sbjct: 149 SIFHAAATSLPLHYP 163


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 138 FHPFLAPVG 112
           FHPFL P G
Sbjct: 762 FHPFLIPTG 770


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,101
Number of Sequences: 336
Number of extensions: 4276
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)