Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0523
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...   226   2e-60
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    29   0.94 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    28   1.2  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    27   2.9  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    26   6.6  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   8.7  

>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score =  226 bits (553), Expect = 2e-60
 Identities = 105/245 (42%), Positives = 154/245 (62%), Gaps = 1/245 (0%)
 Frame = +3

Query: 12  LKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPEEIR 191
           +++L   + + +L +K         ++ ++FW TQPVPK D++     PI+      ++ 
Sbjct: 23  IRELLDRLALRSLIEKEEAAAPPKTYEDFKFWKTQPVPKFDDECTQEGPIDPNTDINQVP 82

Query: 192 AEPYTLPDGFQWDTLNLNEPLVLKELYTLLNENYVEDDDCMFRFDYQTDFLKWALQPPGW 371
            EPY L   F+W T+++     L E++ LL ENYVED   M RF Y ++FL+WAL PPG+
Sbjct: 83  REPYRLLKEFEWATIDVTNDNELSEVHELLTENYVEDATAMLRFAYISEFLRWALMPPGY 142

Query: 372 KMEWHCGVRVVKSGRLVGFISATPADLRIYNH-VQTVVEINFLCVHKKLRSKRVAPVLIR 548
             EWH GVRV  S +LV FISA P  +R+ +  ++   E+NFLC+HKKLRSKR+ P+LI+
Sbjct: 143 VKEWHVGVRVKSSRKLVAFISAVPLSIRVRDKIIKKCAEVNFLCIHKKLRSKRLTPLLIK 202

Query: 549 EITRRVNLTGIFQGVYTAGIVLPKPIATCRYWHRSLNPKKLIDIKFSHLSRNMTMQRTLK 728
           E+TRR +L  ++Q VYTAG++LP P++  RY HRSLN KKL DI F+      T ++   
Sbjct: 203 EVTRRCHLENVWQAVYTAGVLLPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKKETA 262

Query: 729 LFKLP 743
            + LP
Sbjct: 263 KYHLP 267


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 33  MEVLNLQQKPAKTTEEALHKAYQFWSTQPVP-KMDEKIIANEPIEL 167
           MEVL LQ+KP    +  ++K +      PV  K   K++ +E ++L
Sbjct: 588 MEVLELQKKPPYIVQNTMYKLFFGEPLNPVAVKAQRKVMPDENLDL 633



 Score = 28.7 bits (61), Expect = 0.94
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 168 PKSPEEIRAEPYTLPDGFQWDTLNLNEPLV-LKELYTLLNENYVEDDDCMFRFD 326
           P +P  ++A+   +PD    + L+LN P+  + E+   L EN ++ DD +  FD
Sbjct: 613 PLNPVAVKAQRKVMPD----ENLDLNCPINGVIEVPKELLENIIQSDDSLINFD 662


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 399 HEHHNAIPFSNQVVVEPISKNQFGNQNETYNHHLPHNFH 283
           H H +   ++ +   E IS     N +  ++HH  HN H
Sbjct: 546 HNHDHIHKYNEKCDHESISLQNLDNDHHCHHHHENHNMH 584


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
 Frame = +3

Query: 237 NLNEPLVLKELY---TLLNE--NYVEDDDCMFRFDYQTD 338
           N N   +L+ ++    LLNE  NYV+  DC+F   ++TD
Sbjct: 44  NQNRNQLLRSIHIIQNLLNELDNYVDRSDCLFHSVWRTD 82


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -3

Query: 577 PVKLTLLVISLIKTGATRLERNFLCTQRKFISTTV*TWLYILKS-AGVAEMKPTSRPDFT 401
           PV++T  VIS +  G T +E + L  +     TT      IL +   V+ +   +   F+
Sbjct: 36  PVEITQKVISGVYPGVTTIELDNLAAETAATMTTKHPDYAILAARIAVSNLHKQTEKVFS 95

Query: 400 TRTPQCHSIFQP 365
           T   Q H    P
Sbjct: 96  TVVQQLHDYVNP 107


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 88  IKHTNSGQPNRCQKWMKKLLPTSL*NYQNHRKK*GQNPILYLTDS 222
           I H N+ + +R Q W +K +P    +   H+ K        LTDS
Sbjct: 58  IVHLNNLKEDRFQLWFEKYIPQKAADLAVHKSKISAIKQWMLTDS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,281
Number of Sequences: 5004
Number of extensions: 69666
Number of successful extensions: 194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)