SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0523
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0440 + 29401405-29401407,29401721-29401920,29402406-294024...   126   2e-29
08_02_0456 - 17362080-17364156,17364853-17364942,17372615-173733...    29   3.0  
03_05_0554 - 25551220-25551310,25551562-25551695,25552115-255522...    29   3.0  
10_07_0009 - 11770674-11771000,11771079-11771378,11771487-11771807     29   3.9  
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944...    29   3.9  
01_02_0106 - 11175200-11175385,11175463-11175496,11175987-111762...    29   3.9  
11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644           28   6.9  
02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827...    28   6.9  
09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555     28   9.1  
03_04_0214 + 18688480-18688832,18688956-18688999,18689039-186891...    28   9.1  
03_02_1029 - 13488535-13493037                                         28   9.1  
03_02_1026 + 13313672-13313876,13341211-13342005,13363815-133638...    28   9.1  
02_05_0994 - 33369971-33370759,33370856-33370956,33371092-333710...    28   9.1  
01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041     28   9.1  

>01_06_0440 +
           29401405-29401407,29401721-29401920,29402406-29402490,
           29403038-29403121,29403853-29404147,29404228-29404322,
           29406118-29406858
          Length = 500

 Score =  126 bits (303), Expect = 2e-29
 Identities = 56/79 (70%), Positives = 66/79 (83%)
 Frame = +3

Query: 510 KLRSKRVAPVLIREITRRVNLTGIFQGVYTAGIVLPKPIATCRYWHRSLNPKKLIDIKFS 689
           KLRSKR+APVLIRE+TRRV+   I+Q  YTAG+VLP PI TCRYWHRSLNPKKLID+ FS
Sbjct: 255 KLRSKRLAPVLIREVTRRVHQENIWQAAYTAGVVLPTPITTCRYWHRSLNPKKLIDVGFS 314

Query: 690 HLSRNMTMQRTLKLFKLPD 746
            L   MTM RT++L+KLP+
Sbjct: 315 RLGPRMTMSRTVRLYKLPE 333


>08_02_0456 -
           17362080-17364156,17364853-17364942,17372615-17373318,
           17373421-17373451,17374366-17374448,17374517-17374640,
           17376427-17376560
          Length = 1080

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = -2

Query: 665 LWIKRPMPIATCGNRLRQHNSSCIHTLEYTS*VNSSCYFPY*DRSYSLRTQFFVHTKKIY 486
           LW      I  C    R    S I T    + V  SC FP+  R Y LR   FV +K+++
Sbjct: 397 LWNIESWKIIRCAFS-RSITGSRIITTTRINEVAESCCFPHVHRVYKLRPLHFVDSKRLF 455


>03_05_0554 -
           25551220-25551310,25551562-25551695,25552115-25552221,
           25552359-25552437,25552524-25552613,25552790-25553044,
           25553388-25553537,25553677-25553976
          Length = 401

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 501 VHKKLRSKRVAPVLIREITRRVNLTGIF 584
           +H+ LR   +APV+ R+ T  V++ G F
Sbjct: 267 IHEALRLANIAPVMFRKATEDVHIKGFF 294


>10_07_0009 - 11770674-11771000,11771079-11771378,11771487-11771807
          Length = 315

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 42  LNLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPEEI 188
           ++ Q KP  TT     +A    +   +PK   +IIA + + LP SP +I
Sbjct: 1   MSQQGKPISTTTSGSSRARTPRTGNKIPKERFRIIAVDAVGLPTSPRKI 49


>01_05_0687 +
           24288648-24292746,24293737-24293844,24294333-24294442,
           24295208-24295282
          Length = 1463

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +3

Query: 57  KPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPEEIRAEPYTLPDGFQWDTL 236
           +P     E+  + +Q     P P    +  ++EP ELP  P       YT PD  + D +
Sbjct: 232 EPPTPPLESGQEGFQQQQPHPPPTTHPECDSSEPAELPLPPTSPAEIAYTSPDSVEVDVV 291


>01_02_0106 -
           11175200-11175385,11175463-11175496,11175987-11176247,
           11176501-11176831,11176899-11177589,11177611-11178156,
           11178441-11178680
          Length = 762

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 276 LLNENYVEDDDCMFRFDYQTDFL-KWALQPPGWKMEWHCGVRVVKSGRLVGFISAT 440
           L    Y   DDC  ++ +   FL +WAL+   W+M     +   K    +GF+  T
Sbjct: 567 LAGPTYFATDDCPEKYKHGKAFLLEWALKEGPWEMRRMQYMDAKKKKEPIGFLDPT 622


>11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644
          Length = 581

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 111 TQPVPKMDEKIIANEPIELPKSPEEIRAEPYTLPDGFQW 227
           T P+ K   ++ ANE  E+ K  EE++ + Y  P    W
Sbjct: 17  TTPLHKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPW 55


>02_05_0374 +
           28381456-28381785,28382302-28382555,28382665-28382773,
           28383272-28383410,28383525-28383582,28384179-28384196,
           28384301-28384423,28384483-28384681,28384763-28384796,
           28385044-28385153
          Length = 457

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 23/90 (25%), Positives = 37/90 (41%)
 Frame = +3

Query: 9   SLKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPEEI 188
           ++K  K +     L Q P + T     +   F+ST  V K  ++ + +    + K P   
Sbjct: 270 TIKPTKWSYPGGGLNQIPGECTISGDIRLTPFYSTTSVVKKLQEYVHDINENIEKLPTRG 329

Query: 189 RAEPYTLPDGFQWDTLNLNEPLVLKELYTL 278
               Y LPD      L +N PL+  +L  L
Sbjct: 330 PVSKYVLPDENLRGRLIINSPLLTIDLARL 359


>09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555
          Length = 383

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 111 TQPVPKMDEKIIANEPIELPKSPEEIRAEPYTLPDGFQW 227
           T P+ K   ++ ANE  E+ K  EE++ + Y  P    W
Sbjct: 119 TTPLYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPW 157


>03_04_0214 +
           18688480-18688832,18688956-18688999,18689039-18689101,
           18689883-18689956,18691526-18692017
          Length = 341

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 39  VLNLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKS 176
           VLNL+     T+   L          PVP+  E+++A  P E P+S
Sbjct: 267 VLNLKVGKIVTSVPVLQSTNSLTEPLPVPEPIEEVMAISPFEAPES 312


>03_02_1029 - 13488535-13493037
          Length = 1500

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 111 TQPVPKMDEKIIANEPIELPKSPEEIRAEPYTLPDGFQW 227
           T P+ K   ++ ANE  E+ K  EE++ + Y  P    W
Sbjct: 561 TTPLYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPW 599


>03_02_1026 +
           13313672-13313876,13341211-13342005,13363815-13363855,
           13363967-13364140
          Length = 404

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 111 TQPVPKMDEKIIANEPIELPKSPEEIRAEPYTLPDGFQW 227
           T P+ K   ++ ANE  E+ K  EE++ + Y  P    W
Sbjct: 143 TTPLYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPW 181


>02_05_0994 -
           33369971-33370759,33370856-33370956,33371092-33371093,
           33373009-33373610
          Length = 497

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 123 PKMDEKIIANEPIELPKSPEEIR 191
           PKMD+++   E +  P SPE+I+
Sbjct: 359 PKMDDEVEVMEQMSTPNSPEDIK 381


>01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041
          Length = 425

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 123 PKMDEKIIANEPIELPKSPEEIR 191
           PKMD+++   E +  P SPE+I+
Sbjct: 287 PKMDDEVEVMEQMSTPNSPEDIK 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,783,732
Number of Sequences: 37544
Number of extensions: 410103
Number of successful extensions: 972
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -