Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0523
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0440 + 29401405-29401407,29401721-29401920,29402406-294024... 126 2e-29
08_02_0456 - 17362080-17364156,17364853-17364942,17372615-173733... 29 3.0
03_05_0554 - 25551220-25551310,25551562-25551695,25552115-255522... 29 3.0
10_07_0009 - 11770674-11771000,11771079-11771378,11771487-11771807 29 3.9
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 29 3.9
01_02_0106 - 11175200-11175385,11175463-11175496,11175987-111762... 29 3.9
11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644 28 6.9
02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827... 28 6.9
09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555 28 9.1
03_04_0214 + 18688480-18688832,18688956-18688999,18689039-186891... 28 9.1
03_02_1029 - 13488535-13493037 28 9.1
03_02_1026 + 13313672-13313876,13341211-13342005,13363815-133638... 28 9.1
02_05_0994 - 33369971-33370759,33370856-33370956,33371092-333710... 28 9.1
01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041 28 9.1
>01_06_0440 +
29401405-29401407,29401721-29401920,29402406-29402490,
29403038-29403121,29403853-29404147,29404228-29404322,
29406118-29406858
Length = 500
Score = 126 bits (303), Expect = 2e-29
Identities = 56/79 (70%), Positives = 66/79 (83%)
Frame = +3
Query: 510 KLRSKRVAPVLIREITRRVNLTGIFQGVYTAGIVLPKPIATCRYWHRSLNPKKLIDIKFS 689
KLRSKR+APVLIRE+TRRV+ I+Q YTAG+VLP PI TCRYWHRSLNPKKLID+ FS
Sbjct: 255 KLRSKRLAPVLIREVTRRVHQENIWQAAYTAGVVLPTPITTCRYWHRSLNPKKLIDVGFS 314
Query: 690 HLSRNMTMQRTLKLFKLPD 746
L MTM RT++L+KLP+
Sbjct: 315 RLGPRMTMSRTVRLYKLPE 333
>08_02_0456 -
17362080-17364156,17364853-17364942,17372615-17373318,
17373421-17373451,17374366-17374448,17374517-17374640,
17376427-17376560
Length = 1080
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = -2
Query: 665 LWIKRPMPIATCGNRLRQHNSSCIHTLEYTS*VNSSCYFPY*DRSYSLRTQFFVHTKKIY 486
LW I C R S I T + V SC FP+ R Y LR FV +K+++
Sbjct: 397 LWNIESWKIIRCAFS-RSITGSRIITTTRINEVAESCCFPHVHRVYKLRPLHFVDSKRLF 455
>03_05_0554 -
25551220-25551310,25551562-25551695,25552115-25552221,
25552359-25552437,25552524-25552613,25552790-25553044,
25553388-25553537,25553677-25553976
Length = 401
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 501 VHKKLRSKRVAPVLIREITRRVNLTGIF 584
+H+ LR +APV+ R+ T V++ G F
Sbjct: 267 IHEALRLANIAPVMFRKATEDVHIKGFF 294
>10_07_0009 - 11770674-11771000,11771079-11771378,11771487-11771807
Length = 315
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 42 LNLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPEEI 188
++ Q KP TT +A + +PK +IIA + + LP SP +I
Sbjct: 1 MSQQGKPISTTTSGSSRARTPRTGNKIPKERFRIIAVDAVGLPTSPRKI 49
>01_05_0687 +
24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +3
Query: 57 KPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPEEIRAEPYTLPDGFQWDTL 236
+P E+ + +Q P P + ++EP ELP P YT PD + D +
Sbjct: 232 EPPTPPLESGQEGFQQQQPHPPPTTHPECDSSEPAELPLPPTSPAEIAYTSPDSVEVDVV 291
>01_02_0106 -
11175200-11175385,11175463-11175496,11175987-11176247,
11176501-11176831,11176899-11177589,11177611-11178156,
11178441-11178680
Length = 762
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 276 LLNENYVEDDDCMFRFDYQTDFL-KWALQPPGWKMEWHCGVRVVKSGRLVGFISAT 440
L Y DDC ++ + FL +WAL+ W+M + K +GF+ T
Sbjct: 567 LAGPTYFATDDCPEKYKHGKAFLLEWALKEGPWEMRRMQYMDAKKKKEPIGFLDPT 622
>11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644
Length = 581
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 111 TQPVPKMDEKIIANEPIELPKSPEEIRAEPYTLPDGFQW 227
T P+ K ++ ANE E+ K EE++ + Y P W
Sbjct: 17 TTPLHKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPW 55
>02_05_0374 +
28381456-28381785,28382302-28382555,28382665-28382773,
28383272-28383410,28383525-28383582,28384179-28384196,
28384301-28384423,28384483-28384681,28384763-28384796,
28385044-28385153
Length = 457
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/90 (25%), Positives = 37/90 (41%)
Frame = +3
Query: 9 SLKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPEEI 188
++K K + L Q P + T + F+ST V K ++ + + + K P
Sbjct: 270 TIKPTKWSYPGGGLNQIPGECTISGDIRLTPFYSTTSVVKKLQEYVHDINENIEKLPTRG 329
Query: 189 RAEPYTLPDGFQWDTLNLNEPLVLKELYTL 278
Y LPD L +N PL+ +L L
Sbjct: 330 PVSKYVLPDENLRGRLIINSPLLTIDLARL 359
>09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555
Length = 383
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 111 TQPVPKMDEKIIANEPIELPKSPEEIRAEPYTLPDGFQW 227
T P+ K ++ ANE E+ K EE++ + Y P W
Sbjct: 119 TTPLYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPW 157
>03_04_0214 +
18688480-18688832,18688956-18688999,18689039-18689101,
18689883-18689956,18691526-18692017
Length = 341
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 39 VLNLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKS 176
VLNL+ T+ L PVP+ E+++A P E P+S
Sbjct: 267 VLNLKVGKIVTSVPVLQSTNSLTEPLPVPEPIEEVMAISPFEAPES 312
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 111 TQPVPKMDEKIIANEPIELPKSPEEIRAEPYTLPDGFQW 227
T P+ K ++ ANE E+ K EE++ + Y P W
Sbjct: 561 TTPLYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPW 599
>03_02_1026 +
13313672-13313876,13341211-13342005,13363815-13363855,
13363967-13364140
Length = 404
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 111 TQPVPKMDEKIIANEPIELPKSPEEIRAEPYTLPDGFQW 227
T P+ K ++ ANE E+ K EE++ + Y P W
Sbjct: 143 TTPLYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPW 181
>02_05_0994 -
33369971-33370759,33370856-33370956,33371092-33371093,
33373009-33373610
Length = 497
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 123 PKMDEKIIANEPIELPKSPEEIR 191
PKMD+++ E + P SPE+I+
Sbjct: 359 PKMDDEVEVMEQMSTPNSPEDIK 381
>01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041
Length = 425
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 123 PKMDEKIIANEPIELPKSPEEIR 191
PKMD+++ E + P SPE+I+
Sbjct: 287 PKMDDEVEVMEQMSTPNSPEDIK 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,783,732
Number of Sequences: 37544
Number of extensions: 410103
Number of successful extensions: 972
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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