Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0523
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U11280-2|AAK77637.1| 452|Caenorhabditis elegans Hypothetical pr... 318 3e-87
U11280-1|AAA19436.1| 450|Caenorhabditis elegans Hypothetical pr... 318 3e-87
U11280-3|AAM97952.1| 403|Caenorhabditis elegans Hypothetical pr... 317 6e-87
Z71185-3|CAA94905.2| 427|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical p... 29 4.7
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical pr... 29 4.7
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 28 6.2
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 28 6.2
U40953-2|AAB52647.1| 483|Caenorhabditis elegans Hypothetical pr... 28 8.1
>U11280-2|AAK77637.1| 452|Caenorhabditis elegans Hypothetical
protein T17E9.2b protein.
Length = 452
Score = 318 bits (781), Expect = 3e-87
Identities = 147/247 (59%), Positives = 190/247 (76%), Gaps = 5/247 (2%)
Frame = +3
Query: 21 LKMA-MEVLNLQQKPA--KTTEEALHKAYQFWSTQPVPKMDEKIIA--NEPIELPKSPEE 185
L++A ++V N+ P + +EA K++QFWSTQPVP+MDE + A N IE + ++
Sbjct: 40 LRLAGVDVSNMPNIPTAPRDMDEARSKSFQFWSTQPVPQMDETVPADVNCAIEENIALDK 99
Query: 186 IRAEPYTLPDGFQWDTLNLNEPLVLKELYTLLNENYVEDDDCMFRFDYQTDFLKWALQPP 365
+RAEP++LP GF+W ++L++ L ELY LL NYVEDDD MFRFDY DFLKWALQ P
Sbjct: 100 VRAEPFSLPAGFRWSNVDLSDEEQLNELYNLLTRNYVEDDDSMFRFDYSADFLKWALQVP 159
Query: 366 GWKMEWHCGVRVVKSGRLVGFISATPADLRIYNHVQTVVEINFLCVHKKLRSKRVAPVLI 545
G++ EWHCGVR + RL+ FI A P +R+Y+ +VEINFLCVHK LRS+RVAPVLI
Sbjct: 160 GFRPEWHCGVRADSNNRLLAFIGAVPQTVRVYDKTVNMVEINFLCVHKNLRSRRVAPVLI 219
Query: 546 REITRRVNLTGIFQGVYTAGIVLPKPIATCRYWHRSLNPKKLIDIKFSHLSRNMTMQRTL 725
REITRRVN+TGIFQ +TAGIV+PKP++ CRY+HRSLNP+KLID++FSHLS MTM RT+
Sbjct: 220 REITRRVNVTGIFQAAFTAGIVIPKPVSVCRYYHRSLNPRKLIDVRFSHLSAKMTMARTI 279
Query: 726 KLFKLPD 746
KL+KLP+
Sbjct: 280 KLYKLPE 286
>U11280-1|AAA19436.1| 450|Caenorhabditis elegans Hypothetical
protein T17E9.2a protein.
Length = 450
Score = 318 bits (781), Expect = 3e-87
Identities = 147/247 (59%), Positives = 190/247 (76%), Gaps = 5/247 (2%)
Frame = +3
Query: 21 LKMA-MEVLNLQQKPA--KTTEEALHKAYQFWSTQPVPKMDEKIIA--NEPIELPKSPEE 185
L++A ++V N+ P + +EA K++QFWSTQPVP+MDE + A N IE + ++
Sbjct: 38 LRLAGVDVSNMPNIPTAPRDMDEARSKSFQFWSTQPVPQMDETVPADVNCAIEENIALDK 97
Query: 186 IRAEPYTLPDGFQWDTLNLNEPLVLKELYTLLNENYVEDDDCMFRFDYQTDFLKWALQPP 365
+RAEP++LP GF+W ++L++ L ELY LL NYVEDDD MFRFDY DFLKWALQ P
Sbjct: 98 VRAEPFSLPAGFRWSNVDLSDEEQLNELYNLLTRNYVEDDDSMFRFDYSADFLKWALQVP 157
Query: 366 GWKMEWHCGVRVVKSGRLVGFISATPADLRIYNHVQTVVEINFLCVHKKLRSKRVAPVLI 545
G++ EWHCGVR + RL+ FI A P +R+Y+ +VEINFLCVHK LRS+RVAPVLI
Sbjct: 158 GFRPEWHCGVRADSNNRLLAFIGAVPQTVRVYDKTVNMVEINFLCVHKNLRSRRVAPVLI 217
Query: 546 REITRRVNLTGIFQGVYTAGIVLPKPIATCRYWHRSLNPKKLIDIKFSHLSRNMTMQRTL 725
REITRRVN+TGIFQ +TAGIV+PKP++ CRY+HRSLNP+KLID++FSHLS MTM RT+
Sbjct: 218 REITRRVNVTGIFQAAFTAGIVIPKPVSVCRYYHRSLNPRKLIDVRFSHLSAKMTMARTI 277
Query: 726 KLFKLPD 746
KL+KLP+
Sbjct: 278 KLYKLPE 284
>U11280-3|AAM97952.1| 403|Caenorhabditis elegans Hypothetical
protein T17E9.2c protein.
Length = 403
Score = 317 bits (778), Expect = 6e-87
Identities = 144/236 (61%), Positives = 183/236 (77%), Gaps = 2/236 (0%)
Frame = +3
Query: 45 NLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIA--NEPIELPKSPEEIRAEPYTLPDG 218
N+ P + +EA K++QFWSTQPVP+MDE + A N IE + +++RAEP++LP G
Sbjct: 3 NIPTAP-RDMDEARSKSFQFWSTQPVPQMDETVPADVNCAIEENIALDKVRAEPFSLPAG 61
Query: 219 FQWDTLNLNEPLVLKELYTLLNENYVEDDDCMFRFDYQTDFLKWALQPPGWKMEWHCGVR 398
F+W ++L++ L ELY LL NYVEDDD MFRFDY DFLKWALQ PG++ EWHCGVR
Sbjct: 62 FRWSNVDLSDEEQLNELYNLLTRNYVEDDDSMFRFDYSADFLKWALQVPGFRPEWHCGVR 121
Query: 399 VVKSGRLVGFISATPADLRIYNHVQTVVEINFLCVHKKLRSKRVAPVLIREITRRVNLTG 578
+ RL+ FI A P +R+Y+ +VEINFLCVHK LRS+RVAPVLIREITRRVN+TG
Sbjct: 122 ADSNNRLLAFIGAVPQTVRVYDKTVNMVEINFLCVHKNLRSRRVAPVLIREITRRVNVTG 181
Query: 579 IFQGVYTAGIVLPKPIATCRYWHRSLNPKKLIDIKFSHLSRNMTMQRTLKLFKLPD 746
IFQ +TAGIV+PKP++ CRY+HRSLNP+KLID++FSHLS MTM RT+KL+KLP+
Sbjct: 182 IFQAAFTAGIVIPKPVSVCRYYHRSLNPRKLIDVRFSHLSAKMTMARTIKLYKLPE 237
>Z71185-3|CAA94905.2| 427|Caenorhabditis elegans Hypothetical
protein C35A5.4 protein.
Length = 427
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 135 EKIIANEPIE-LPKSPEEIRAEP-YTLPDGFQWDTLNLNEPLVLKELYTLLNENYVE 299
+K +A ++ + KS EE +A P Y DGF W N + L+ + N NY+E
Sbjct: 10 KKKVAEPAVQKIRKSREEDKATPCYLSNDGFLWTDNNPDLKLIEPRILVSTNYNYLE 66
>Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical
protein C53A5.2 protein.
Length = 1150
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 219 FQWDTLNLNE-PLVLKELYTLLNENYVEDDDCMFRFDYQTDFLKW 350
F T ++E P +L +L+ L E V++ F F Y+T LKW
Sbjct: 394 FAEPTCRVSEAPRLLTDLFKKLKEMVVQEKRIKFIFYYKTYILKW 438
>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical
protein T08G11.1b protein.
Length = 3185
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +3
Query: 9 SLKDLKMA-MEVL-NLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPE 182
S+ DLK+A M V+ +L +++ L + + P PK DEK A + +E+P +
Sbjct: 742 SIDDLKLAKMRVIGDLPNIVIGISDDRLIGLMKLGLSIPTPKADEKTKAEKELEVPVAKI 801
Query: 183 EIRAEPYTL 209
+ RA+ T+
Sbjct: 802 KDRAKMRTI 810
>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical
protein T08G11.1a protein.
Length = 3212
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +3
Query: 9 SLKDLKMA-MEVL-NLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPE 182
S+ DLK+A M V+ +L +++ L + + P PK DEK A + +E+P +
Sbjct: 742 SIDDLKLAKMRVIGDLPNIVIGISDDRLIGLMKLGLSIPTPKADEKTKAEKELEVPVAKI 801
Query: 183 EIRAEPYTL 209
+ RA+ T+
Sbjct: 802 KDRAKMRTI 810
>Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical
protein C53A5.2 protein.
Length = 1150
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 219 FQWDTLNLNE-PLVLKELYTLLNENYVEDDDCMFRFDYQTDFLKW 350
F T ++E P +L +L+ L E V++ F F Y+T LKW
Sbjct: 394 FAEPTCRVSEAPRLLTDLFKKLKEMVVQEKRIKFIFYYKTYILKW 438
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 12 LKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPEEI 188
+K +++ MEVL T EE L +A+Q +++ + ++I+ N E K EEI
Sbjct: 3838 IKTIQLRMEVLKRVSMNQSTAEELLQEAFQ--NSEQQMETFQRIVQNVHWEETKLTEEI 3894
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 12 LKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPEEI 188
+K +++ MEVL T EE L +A+Q +++ + ++I+ N E K EEI
Sbjct: 3838 IKTIQLRMEVLKRVSMNQSTAEELLQEAFQ--NSEQQMETFQRIVQNVHWEETKLTEEI 3894
>U40953-2|AAB52647.1| 483|Caenorhabditis elegans Hypothetical
protein F53B1.2 protein.
Length = 483
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 42 LNLQQKPAKTTEEALHKAYQFWS 110
L + +P T +E LHKA+ WS
Sbjct: 288 LQCEARPNTTMQEKLHKAFHIWS 310
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,700,181
Number of Sequences: 27780
Number of extensions: 393200
Number of successful extensions: 1073
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -