Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0523
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.8  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   4.0  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 79  RHCIKHTNSGQPNRCQKWMKKLLPT 153
           +HC  H    + N C+ W+ K  PT
Sbjct: 387 QHCELHMQPRKKNCCRSWLSK-FPT 410


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 79  RHCIKHTNSGQPNRCQKWMKKLLPT 153
           +HC  H    + N C+ W+ K  PT
Sbjct: 387 QHCELHMQPRKKNCCRSWLSK-FPT 410


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 351 PISKNQFGNQNETYNHHLPHNFH 283
           P+S N   N N  YN++  HN++
Sbjct: 87  PLSNNY--NYNNNYNNYNKHNYN 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,187
Number of Sequences: 438
Number of extensions: 5035
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)