Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0523
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57020.1 68418.m07117 myristoyl-CoA:protein N-myristoyltransf...   272   2e-73
At2g44175.1 68415.m05495 N-myristoyltransferase-related similar ...    39   0.003
At1g11740.1 68414.m01347 ankyrin repeat family protein contains ...    29   3.3  
At3g18520.2 68416.m02354 histone deacetylase family protein simi...    28   5.8  
At3g18520.1 68416.m02353 histone deacetylase family protein simi...    28   5.8  
At1g74790.1 68414.m08665 expressed protein contains similarity t...    28   7.6  

>At5g57020.1 68418.m07117 myristoyl-CoA:protein
           N-myristoyltransferase 1 (NMT1) identical to
           N-myristoyltransferase 1 (NMT1) [Arabidopsis thaliana]
           GI:7339834
          Length = 434

 Score =  272 bits (667), Expect = 2e-73
 Identities = 123/223 (55%), Positives = 161/223 (72%), Gaps = 4/223 (1%)
 Frame = +3

Query: 90  KAYQFWSTQPVPK---MDEKIIANEPIELPKSP-EEIRAEPYTLPDGFQWDTLNLNEPLV 257
           K ++FW TQPV +   + +  +   PIE P +P  E++ EPY LP  ++W T ++N   +
Sbjct: 46  KTHKFWETQPVGQFKDIGDTSLPEGPIE-PATPLSEVKQEPYNLPSVYEWTTCDMNSDDM 104

Query: 258 LKELYTLLNENYVEDDDCMFRFDYQTDFLKWALQPPGWKMEWHCGVRVVKSGRLVGFISA 437
             E+Y LL  NYVEDD+ MFRF+Y  +FL+WAL+PPG+   WH GVR   S +LV FIS 
Sbjct: 105 CSEVYNLLKNNYVEDDENMFRFNYSKEFLRWALRPPGYYQSWHIGVRAKTSKKLVAFISG 164

Query: 438 TPADLRIYNHVQTVVEINFLCVHKKLRSKRVAPVLIREITRRVNLTGIFQGVYTAGIVLP 617
            PA +R+ + V  + EINFLCVHKKLRSKR+APV+I+E+TRRV+L  I+Q  YTAG++LP
Sbjct: 165 VPARIRVRDEVVKMAEINFLCVHKKLRSKRLAPVMIKEVTRRVHLENIWQAAYTAGVILP 224

Query: 618 KPIATCRYWHRSLNPKKLIDIKFSHLSRNMTMQRTLKLFKLPD 746
            PI TC+YWHRSLNPKKLID+ FS L   MTM RT+KL+KLPD
Sbjct: 225 TPITTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPD 267


>At2g44175.1 68415.m05495 N-myristoyltransferase-related similar to
           N-myristoyltransferase 1 GI:7339834 from [Arabidopsis
           thaliana]
          Length = 115

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +3

Query: 144 IANEPIELPKSPEEIRAEPYTLPDGFQWDTLNLNEPLVLKELYTLLNENYVED 302
           +   P+E      EI+ EP  LP G++W T +LN   +  E+   L E Y+ D
Sbjct: 44  LPESPVEPANPLSEIKQEPEKLPCGYEWITCDLNTDDMCSEVCKFLKEQYLVD 96


>At1g11740.1 68414.m01347 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 624

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +3

Query: 180 EEIRAEPYTLPDGFQWDTLNLNEPLVLKELYTLLNENYVEDDDCMFRFDYQTDFLKWALQ 359
           EE   +P+T+P G++W T N +  +  K+  +  N+ Y+             D  K A +
Sbjct: 510 EEQVVDPFTIPTGYKW-TSNSDNSVFTKK--SSKNQRYIR----------YWDHYKMASE 556

Query: 360 PPGWKMEWHCG 392
            P W  +W  G
Sbjct: 557 APSWADQWGTG 567


>At3g18520.2 68416.m02354 histone deacetylase family protein similar
           to SP|P53973 Histone deacetylase HDA1 {Saccharomyces
           cerevisiae}; contains Pfam profile PF00850: Histone
           deacetylase family; AT-acceptor splice site at intron 7
          Length = 556

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = +3

Query: 159 IELPKSPEEIRAEPYTLPDGFQWDTLNLNEPLVLKELY---TLLNENYVEDDDCMFR-FD 326
           I +P S EE       +  G       ++  +  +++Y    LLN++  EDDDC +    
Sbjct: 23  IAVPCSGEECSNGDINVAPGVSAKRARVSREMTFEDIYGADALLNDDDDEDDDCDWEPVQ 82

Query: 327 YQTDFLKW 350
              +F+KW
Sbjct: 83  APMEFVKW 90


>At3g18520.1 68416.m02353 histone deacetylase family protein similar
           to SP|P53973 Histone deacetylase HDA1 {Saccharomyces
           cerevisiae}; contains Pfam profile PF00850: Histone
           deacetylase family; AT-acceptor splice site at intron 7
          Length = 552

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = +3

Query: 159 IELPKSPEEIRAEPYTLPDGFQWDTLNLNEPLVLKELY---TLLNENYVEDDDCMFR-FD 326
           I +P S EE       +  G       ++  +  +++Y    LLN++  EDDDC +    
Sbjct: 23  IAVPCSGEECSNGDINVAPGVSAKRARVSREMTFEDIYGADALLNDDDDEDDDCDWEPVQ 82

Query: 327 YQTDFLKW 350
              +F+KW
Sbjct: 83  APMEFVKW 90


>At1g74790.1 68414.m08665 expressed protein contains similarity to
           hedgehog-interacting protein GI:4868122 from [Mus
           musculus]
          Length = 695

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 92  SIPILVNPTGAKNG*KNYCQRAYRT 166
           S+PIL N T + N  +N+C   + T
Sbjct: 101 SVPILCNSTSSANSTENFCSETWET 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,443,738
Number of Sequences: 28952
Number of extensions: 354749
Number of successful extensions: 786
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)