Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0522
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q09EE6 Cluster: Putative uncharacterized protein; n=1; ...    38   0.35 
UniRef50_Q9G8N3 Cluster: NADH-ubiquinone oxidoreductase; n=1; Na...    35   2.5  

>UniRef50_Q09EE6 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 185

 Score = 37.5 bits (83), Expect = 0.35
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = -1

Query: 720 HYA--VFPMILNFQFRIIICTD*YITHIHIQLLYIYYGTVLFYFRIFKSLFIN 568
           HYA  +FP I+   F +   T  YI  +H+Q++Y++  T+L +  +F ++  N
Sbjct: 73  HYALYIFPGIMEVSFLVTFATK-YIRFLHLQMIYLFAHTILSFIFLFANIVPN 124


>UniRef50_Q9G8N3 Cluster: NADH-ubiquinone oxidoreductase; n=1;
           Naegleria gruberi|Rep: NADH-ubiquinone oxidoreductase -
           Naegleria gruberi
          Length = 186

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = -1

Query: 696 LNFQFRIII---CTD*YITHIHIQLLYIYYGTVLFYFRIFKSLFINFSLELESFISLCY 529
           +N QF+ +I   C D  +      L+Y +  ++ ++FR+F   FI    ELES  SLCY
Sbjct: 48  MNCQFKSLIDFTCVDYSLNKKRFNLIY-HIISIYYHFRVFLKFFIE---ELESMYSLCY 102


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,272,522
Number of Sequences: 1657284
Number of extensions: 11255359
Number of successful extensions: 21782
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21773
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)