Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0522
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    27   2.2  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    27   3.8  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.6  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   8.7  

>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 642 HIQLLYIYYGTVLFYFRIFKSLFINFSLELESFISLCYK 526
           H+ + + Y G V F  + +K    N S ELE   SLC+K
Sbjct: 230 HVVIFHYYLGIVAFLNQNYK----NASAELEIAFSLCHK 264


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 277 SF*QTRFIYANPFHNSFRNTFNHLSPNQVNETIAF-LFAFINKRQD*IFFEGDPPFID 107
           +F QT   Y N  +N     FN ++PN  N  +   L  F +  Q  +F  G+ P++D
Sbjct: 452 NFLQTLPQYMNDVYNPSGLAFNPVNPNANNSFVNLNLIQFTSPSQA-LFDYGEGPYVD 508


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 364 FNIALSKSSCYNFYDIL 414
           FNIAL K +  NFYD L
Sbjct: 254 FNIALFKQTAKNFYDTL 270


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -1

Query: 726 RKHYAVFPMILNFQFRIIICTD*YITHIHIQLLYIYYGTVLFYFRIFKSLFINFS 562
           R H+     I+    R+I      IT I I  L+ +Y  +  + R+F  LF+  S
Sbjct: 269 RIHFETSFNIIRLACRVIADIP-QITLIFISFLFSFYVLIFIWVRLFARLFLRGS 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,284
Number of Sequences: 5004
Number of extensions: 53285
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)