Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0522
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0481 + 16433648-16433746,16435136-16435394,16435883-164362...    31   1.3  
04_03_0471 - 16292916-16293209,16294558-16294803,16297557-162976...    28   9.1  

>04_03_0481 +
           16433648-16433746,16435136-16435394,16435883-16436261,
           16436498-16436716,16436814-16436949,16437502-16437717,
           16437773-16437835
          Length = 456

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 98  LAAVDEWWVAFEENLILTFINEREQKRYCLVHLIW*E 208
           L A+ EWW    E++ L+++ +R  + Y   H+++ E
Sbjct: 241 LKAISEWWRDLNEHVELSYLRDRVVESYTCSHMLFYE 277


>04_03_0471 -
           16292916-16293209,16294558-16294803,16297557-16297692,
           16297765-16297983,16298194-16298572,16298967-16299225,
           16300044-16300114,16300604-16300625
          Length = 541

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 98  LAAVDEWWVAFEENLILTFINEREQKRYCLVH 193
           L A+ EWW    + + LT+I++R  + Y   H
Sbjct: 239 LKAISEWWKDLYKYIGLTYISDRAVESYIWSH 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,851,769
Number of Sequences: 37544
Number of extensions: 270214
Number of successful extensions: 407
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)