Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0521
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_13676| Best HMM Match : Spindle_assoc (HMM E-Value=7.2)             29   3.3  
SB_47089| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)              28   4.3  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.3  
SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)                    28   5.7  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_34584| Best HMM Match : Drf_FH1 (HMM E-Value=0.99)                  28   5.7  
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)                   27   7.6  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         27   7.6  
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 660

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 366 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 229
           STT   E +SSTD  EP +  +    + +RD R     ++ D RDP
Sbjct: 195 STTETSETQSSTDTREPVNNRDTRETVNNRDTR--DTVNNRDTRDP 238



 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = -3

Query: 429 TDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTD 250
           T E+P    + +  +  + + + TP  E +S+TD  +P +  +    + +RD R     +
Sbjct: 72  TTETPETQSTTDTPETQSTITTETP--ETQSTTDTRDPVNNRDTRDPINNRDTR--DPVN 127

Query: 249 SIDLRDP 229
           + D RDP
Sbjct: 128 NTDTRDP 134


>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1560

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 252 DSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDS 148
           DS  ++DP G+RR++  F  E R V    L+  D+
Sbjct: 101 DSPPIKDPPGVRRKIEEFTIEQRAVNKRRLDLLDT 135


>SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 393 RSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDL 238
           RS  D    ST     R S+   S+P+   EL+   R++ A  ++ TD + L
Sbjct: 218 RSYQDLHRQSTPQHGRRGSTQQSSQPKFVNELFYKQRAKSAHSQRPTDKLHL 269


>SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 408 GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKK 259
           G S+ RS  D A+  T PR   ++      P       P++ SRD   +K
Sbjct: 300 GPSIARSHSDWAITRTKPRNRERAPESSQAPNDEAGKNPEVVSRDTMAQK 349


>SB_13676| Best HMM Match : Spindle_assoc (HMM E-Value=7.2)
          Length = 259

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/108 (19%), Positives = 42/108 (38%)
 Frame = -3

Query: 381 DAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSR 202
           D+  P  TP   +     +S    R          ++++K   +   L +P+GL+ + S 
Sbjct: 26  DSTTPPPTPESPKVEGFRFSSSTKRNN---QNECGNSKLKGFMNRRQLSEPSGLKEQNSE 82

Query: 201 FECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGS 58
                + +    ++  ++  +T +  L D   L   +  F HNP   S
Sbjct: 83  KVGAAKPLLKPAIQTTNAEDATETTKLQDICDLFEKIVDFNHNPTSES 130


>SB_47089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 492

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 22/79 (27%), Positives = 36/79 (45%)
 Frame = -3

Query: 390 SQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRR 211
           ++  AAL S  P+ E   STD S  +H T+L   L S D+    +    D+ +P  +  +
Sbjct: 89  AESKAALLSNLPK-ESGPSTDSSISQHSTDLVSTLESGDSSTFAQDKPADVVEPQFIADK 147

Query: 210 VSRFECETRLVKSHCLEPP 154
                  T+   +  +EPP
Sbjct: 148 -DNSSLLTQEKPAEFMEPP 165


>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = -3

Query: 429 TDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTD 250
           T E+P    + +  +  + + + TP  E +S+TD  +P +  +    + +RD R     +
Sbjct: 72  TTETPETQSTTDTPETQSTITTETP--ETQSTTDTRDPVNNRDTRDPINNRDTR--DPVN 127

Query: 249 SIDLRDP 229
           + D RDP
Sbjct: 128 NTDTRDP 134


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 366  STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKK 256
            S    QER++  D + PRH  EL PD+R  D RV ++
Sbjct: 1453 SRVESQERQTMRD-TRPRHPDELRPDIR-HDIRVAQE 1487


>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
          Length = 888

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 401 VSTDRSTTLLYRAQHPARNGSRLQTIPSPD 312
           + T  ST   +R  HP +  S +QT+PS D
Sbjct: 168 IQTLPSTDSAHRTDHPTQTESTVQTLPSTD 197


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = -3

Query: 402  SLNRSQHDAALPSTTPRQERKSSTDYSEPRHR----TELYPDLRSRDARVKKKTDSIDLR 235
            S +R + D+  PS  PR+ RKS +  S PR R    +   P +RS      ++  +    
Sbjct: 904  SPSRRRRDSPTPSPPPRRRRKSPSP-SPPRRRRRSPSNSPPPMRSSPLPPPQRKRASTPP 962

Query: 234  DPNGLRRRVSRFECETR 184
             P   RR+V+  E + R
Sbjct: 963  SPRRARRKVASPEEQDR 979


>SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 369 PSTTPRQERKSSTDYSE-PRHRTELYPD 289
           P+T PR +R+S T  S+  RH + L PD
Sbjct: 8   PNTIPRSDRRSRTGISQRHRHTSSLTPD 35


>SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)
          Length = 626

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -3

Query: 390 SQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 229
           ++  AAL S  P+ E   STD S  +H T+L   L S D+    +    D+ +P
Sbjct: 434 AESKAALLSNLPK-ESGPSTDSSISQHSTDLVSTLESGDSSTFAQDKPADVVEP 486


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 137  VEPRESGGSK-QCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRS 292
            +E  +S G + +CD TSR+S   R       F ++R++   F   + S   RS
Sbjct: 2037 IEDLDSFGQRDRCDGTSRISRQSRSRIETDVFPTKRNLSHSFKDVKTSESERS 2089


>SB_34584| Best HMM Match : Drf_FH1 (HMM E-Value=0.99)
          Length = 217

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 24  FMHSAERPVVRSYHPRDYA*TPLRPKPA*PNPARICSLWSPESREALNNVTLLVAFRI-- 197
           F H +  P+ R +HP      PL P+    +   +  ++ PESREA   V   V  RI  
Sbjct: 153 FHHESNEPLPRMFHPESN--EPL-PRMFTESNEHLPRMFHPESREAAVVVKPFVPVRIAH 209

Query: 198 QNA 206
           QNA
Sbjct: 210 QNA 212


>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
          Length = 831

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -3

Query: 390 SQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRD 232
           S HD    S +P ++  +  + SEPR + + +P  R+ + +     D+ D  D
Sbjct: 475 SNHDRVNNSQSPSEQPLNQANGSEPRKQKKQFPMERTTNIQPNGSGDNHDRED 527


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = -3

Query: 231  PNGLRRRVSRFECET----RLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 82
            PN LR R S F         L    CL PP++ G    I L D + LA    A+
Sbjct: 1246 PNDLRGRWSDFFSNLFQLEHLELDRCLRPPNAEGKPWLIILSDGSDLAYGFAAY 1299


>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -3

Query: 207 SRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPAD 64
           +R+  E +L + H L PP        +S   SA  +SA   F   P D
Sbjct: 35  ARYRAEAQLNRRHGLSPPTPPEGISPLSSSSSASSSSAASPFHTIPRD 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,758,828
Number of Sequences: 59808
Number of extensions: 329271
Number of successful extensions: 1184
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)