Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0521
(545 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain... 30 0.88
At3g53440.2 68416.m05898 expressed protein 30 1.2
At3g53440.1 68416.m05897 expressed protein 30 1.2
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta... 29 2.0
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 29 2.7
At5g17160.1 68418.m02010 expressed protein 27 6.2
At4g35390.1 68417.m05027 DNA-binding protein-related contains Pf... 27 6.2
At4g27120.2 68417.m03898 expressed protein 27 6.2
At4g27120.1 68417.m03897 expressed protein 27 6.2
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei... 27 6.2
At5g03560.1 68418.m00314 expressed protein 27 8.2
At1g14740.1 68414.m01762 expressed protein 27 8.2
>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein
Length = 564
Score = 30.3 bits (65), Expect = 0.88
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = -3
Query: 342 KSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 169
K S + +PR R LY D + + + K+T S+D+ NG + S+ E R+ + H
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196
>At3g53440.2 68416.m05898 expressed protein
Length = 512
Score = 29.9 bits (64), Expect = 1.2
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = -3
Query: 345 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 166
RKS+ +P R+ L++RD++VK + D +P RR RLV S
Sbjct: 4 RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63
Query: 165 LEPPDSRGSTVSIS 124
DSR ++IS
Sbjct: 64 SPIEDSRSKKLNIS 77
>At3g53440.1 68416.m05897 expressed protein
Length = 512
Score = 29.9 bits (64), Expect = 1.2
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = -3
Query: 345 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 166
RKS+ +P R+ L++RD++VK + D +P RR RLV S
Sbjct: 4 RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63
Query: 165 LEPPDSRGSTVSIS 124
DSR ++IS
Sbjct: 64 SPIEDSRSKKLNIS 77
>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
DNA repair protein (rad1); almost identical to 5' repair
endonuclease (GI:8926611) [Arabidopsis thaliana]
Length = 956
Score = 29.1 bits (62), Expect = 2.0
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Frame = -3
Query: 408 GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 229
G S+ R +H+A + + + ++ +TD + + E + D S KK DP
Sbjct: 492 GSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKK-------DP 544
Query: 228 NGLRRRVSRFECETRLVKSHCLEPPDS--RGSTVSISLPDSA 109
LRR + +T K L P++ + + S S P A
Sbjct: 545 TSLRRSLRSCNKKTTNSKPEILPGPENEEKANEASTSAPQEA 586
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = -3
Query: 351 QERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKS 172
+E K+S D S+ H E + S A KK+ +S+ +D + +S E +++
Sbjct: 95 EEIKASVDESDLTHMREKSAYV-SALAEAKKREESLK-KDVGIAKECISSLEKTLHEMRA 152
Query: 171 HCLEPPDSRGSTVS 130
C E S GST+S
Sbjct: 153 ECAETKVSAGSTMS 166
>At5g17160.1 68418.m02010 expressed protein
Length = 569
Score = 27.5 bits (58), Expect = 6.2
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = -3
Query: 369 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECE 190
PST R R+ +T +EP+ ++L SR R K+ + D+ D + + V++ E +
Sbjct: 65 PSTATRTTRRKTTTKAEPQPSSQLV----SRSCRSTSKSLAGDM-DQENINKNVAQ-EMK 118
Query: 189 TRLVK--SHCLEPPDSRGSTVSISLPDS 112
T VK ++ L+ P + GST S S
Sbjct: 119 TSNVKFEANVLKTP-AAGSTRKTSAATS 145
>At4g35390.1 68417.m05027 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 299
Score = 27.5 bits (58), Expect = 6.2
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -3
Query: 405 LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRD-P 229
+ LNRS+ D A TTP SS S P R ++ K K +I RD P
Sbjct: 30 MELNRSEADEAKAETTPTGGATSSATASGSSSGRR--PRGRPAGSKNKPKPPTIITRDSP 87
Query: 228 NGLRRRV 208
N LR V
Sbjct: 88 NVLRSHV 94
>At4g27120.2 68417.m03898 expressed protein
Length = 298
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 32 LGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-QCDFTSRVSHSKRE 208
+ RA GG ++ AS + +++ E+G + E+GG++ + +RE
Sbjct: 47 VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQERE 106
Query: 209 TRRRSPFGSRRS 244
+R++ +R S
Sbjct: 107 AQRQAEEATRES 118
>At4g27120.1 68417.m03897 expressed protein
Length = 298
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 32 LGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-QCDFTSRVSHSKRE 208
+ RA GG ++ AS + +++ E+G + E+GG++ + +RE
Sbjct: 47 VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQERE 106
Query: 209 TRRRSPFGSRRS 244
+R++ +R S
Sbjct: 107 AQRQAEEATRES 118
>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
hsp20 family protein contains Pfam profile: PF00011
Hsp20/alpha crystallin family
Length = 285
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 93 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 233
RPK P A + ++WSP S A + + +VA + A D+ +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216
>At5g03560.1 68418.m00314 expressed protein
Length = 241
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = -3
Query: 372 LPSTTPRQERKSSTDYS---EPRHRTELYPDLRSRDARVKKKTDSIDL 238
L +++ R+E+K++ +S + H +L P+LR R V+ +TD I++
Sbjct: 64 LTASSKRKEKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSETDIINV 111
>At1g14740.1 68414.m01762 expressed protein
Length = 733
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 50 GAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK--QCDFTSRVSHSKRETRRRS 223
G +L + LC N+ K SL + GK+++T S K + DF + + ++R++
Sbjct: 67 GNELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYDDKWVERDFFNLREMNPNSSKRKA 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,741,128
Number of Sequences: 28952
Number of extensions: 223630
Number of successful extensions: 649
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -