Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0519
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...   344   9e-96
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   2.9  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.8  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   6.6  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     26   6.6  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   8.7  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   8.7  

>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score =  344 bits (845), Expect = 9e-96
 Identities = 157/227 (69%), Positives = 186/227 (81%), Gaps = 1/227 (0%)
 Frame = +2

Query: 5   RGIQXKAITDVINIGIGGSDLGPLMVTEALKPYAN-HLKVHFVSNIDGTHLAEVLKKLNP 181
           +G   K I  ++N+GIGGSDLGP+MVTEALKPY   +L++HFVSNIDGTHLAE LKK +P
Sbjct: 147 KGYTGKPIKSIVNVGIGGSDLGPVMVTEALKPYGQENLELHFVSNIDGTHLAEALKKCDP 206

Query: 182 ETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALSTNAEKVTAFGIDAN 361
           ET LF+IASKTFTT ET TNA SAK WFL SAKDPS VA+HFVALSTN ++VTAFGI A 
Sbjct: 207 ETTLFLIASKTFTTAETCTNAKSAKDWFLASAKDPSHVAKHFVALSTNEKEVTAFGISAQ 266

Query: 362 NMFGFWDWVGGRYSLWSAIGLSISLYIGHENFEKLLDGANSMDQHFVTAPLEKNAPVILA 541
           NMF F DWVGGRYS+WSAIGLS++LYIG+ENFE  L GA++MD++F + PLEKN P + A
Sbjct: 267 NMFEFSDWVGGRYSVWSAIGLSVALYIGYENFEAFLSGAHAMDEYFCSTPLEKNIPALAA 326

Query: 542 LLGVWYHNFYGAETHALLPYDQYLHRFAAYFQQGDMESNGKYXTRSG 682
           L+ +WY +F+GA+TH + PYDQYLHRF AY QQ  MESNGK  TRSG
Sbjct: 327 LISIWYSDFFGAQTHLVAPYDQYLHRFPAYLQQLSMESNGKAITRSG 373



 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 690 VEYSTGPIXWGRXPGPNGQ 746
           V Y+TG I WG  PG N Q
Sbjct: 376 VNYTTGKILWGE-PGTNSQ 393


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 420 PIADHSEYLPPTQSQKPNMLLASIP 346
           P+A ++E  PP   Q P +LL ++P
Sbjct: 433 PLASNAENKPPVAQQSPPVLLPTLP 457


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 25/66 (37%), Positives = 30/66 (45%)
 Frame = -3

Query: 471 SRSFSKFSCPMYSEMDRPIADHSEYLPPTQSQKPNMLLASIPNAVTFSAFVDKATKCLAT 292
           S +FS    P  S     I DHS   PP+   K   L A  PN+ TF+    K  + LAT
Sbjct: 232 SSTFSPLRTPTSSSKTFVIVDHSTPSPPSIRTK---LEAFAPNS-TFA--TQKRLRRLAT 285

Query: 291 AEGSLA 274
            E S A
Sbjct: 286 LESSPA 291


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +2

Query: 140  DGTHLAEVLKKLNPETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALS 319
            D   LAE+LKK+ P+  L +I       ++ + N       FL    D  + +R   ++ 
Sbjct: 1228 DEIELAEILKKIFPKLTLVLIDDPWSILKKLLQN-EQFNVVFLHFGNDKVSSSRLMYSVR 1286

Query: 320  TNA 328
            T+A
Sbjct: 1287 TSA 1289


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 252 AELALVIVSCVVNVLDAMMNSAVSGFSFFKTSARWVPSMLDTKWTLR 112
           +ELA++IV+C+       +    S F+ F ++    PS  +TK T++
Sbjct: 191 SELAILIVNCLWEAFSPQVMEVWSKFTRFSSTVE--PSRAETKRTVQ 235


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 564 LWYQTPNSAKITGAFFSSGAVTKCWSMELAPSRSFSKF 451
           LW     +  IT + +S      C   ELAP R F KF
Sbjct: 170 LWIGLVYNISITLSLYSLTTFWVCLHEELAPFRPFPKF 207


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +2

Query: 542 LLGVWYHNFYGAETHAL-LPYDQYL 613
           LL  WY  FY + TH   + Y Q+L
Sbjct: 689 LLPTWYTAFYNSHTHGFPILYPQFL 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,790
Number of Sequences: 5004
Number of extensions: 59704
Number of successful extensions: 200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)