Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0519
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1040 + 8163654-8163704,8163814-8163935,8164011-8164092,816... 185 4e-47
03_06_0143 + 31962241-31962291,31962385-31962506,31962572-319626... 185 4e-47
09_04_0439 - 17594131-17594271,17595018-17595100,17595199-175953... 99 2e-21
08_02_1017 - 23616244-23616381,23616471-23616537,23617160-236172... 89 3e-18
03_04_0044 + 16754638-16754676,16755472-16755598,16756325-167564... 31 1.3
11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640... 30 2.3
02_03_0341 - 17948124-17948183,17948417-17948499,17948668-179487... 30 2.3
04_03_0648 - 18393142-18393174,18393259-18393341,18393569-183936... 29 3.9
02_05_0749 + 31468643-31469086 29 3.9
01_01_0277 + 2274383-2274465,2274889-2274955,2275040-2275110,227... 29 3.9
03_06_0459 + 34085134-34086269,34086471-34086717 29 5.2
02_01_0256 + 1680240-1680485,1680950-1681024,1681527-1681776,168... 29 5.2
09_05_0007 - 20036981-20037159,20037690-20037943,20038103-200383... 28 9.1
05_04_0147 - 18419864-18421297 28 9.1
04_03_0145 - 11799689-11800108 28 9.1
03_06_0354 - 33333634-33333840,33334106-33334213,33335384-333355... 28 9.1
>06_01_1040 +
8163654-8163704,8163814-8163935,8164011-8164092,
8164166-8164213,8164516-8164671,8164747-8164843,
8164942-8164984,8165375-8165442,8165533-8165617,
8165698-8165746,8165968-8166040,8166119-8166179,
8167114-8167180,8167400-8167453,8167537-8167665,
8168192-8168255,8168366-8168439,8168523-8168576,
8168696-8168764,8169394-8169483,8169656-8169763,
8169876-8169923
Length = 563
Score = 185 bits (450), Expect = 4e-47
Identities = 104/234 (44%), Positives = 140/234 (59%), Gaps = 7/234 (2%)
Frame = +2
Query: 8 GIQXKAITDVINIGIGGSDLGPLMVTEALKP------YANHLKVHFVSNIDGTHLAEVLK 169
G KA+T+V+++GIGGS LGPL V AL+ A ++ F++N+D +A +K
Sbjct: 155 GATGKALTNVVSVGIGGSFLGPLFVHAALQTDPEAAESAKGRQLRFLANVDPVDVARSIK 214
Query: 170 KLNPETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALSTNAEKVTAFG 349
L+PET L ++ SKTFTT ET+ NA + K W + S P AVA+H +A+STN E V FG
Sbjct: 215 DLDPETTLVVVVSKTFTTAETMLNARTLKEWIVSSL-GPDAVAKHMIAVSTNLELVEKFG 273
Query: 350 IDANNMFGFWDWVGGRYSLWSAIG-LSISLYIGHENFEKLLDGANSMDQHFVTAPLEKNA 526
ID N F FWDWVGGRYS+ SA+G L +SL G +K L+GA S+D+HF ++ EKN
Sbjct: 274 IDPKNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFPIVQKFLEGAASIDKHFRSSSFEKNI 333
Query: 527 PVILALLGVWYHNFYGAETHALLPYDQYLHRFAAYFQQGDMESNGKYXTRSGAR 688
P A+LPY Q L +FA + QQ MESNGK + G +
Sbjct: 334 P-------------------AILPYSQALEKFAPHIQQLSMESNGKGVSIDGVQ 368
>03_06_0143 +
31962241-31962291,31962385-31962506,31962572-31962671,
31962775-31962822,31963096-31963251,31963330-31963426,
31963525-31963567,31963970-31964037,31964139-31964223,
31964297-31964345,31964566-31964638,31964708-31964768,
31965417-31965483,31965709-31965762,31965854-31965982,
31966485-31966548,31966655-31966728,31966793-31966867,
31966972-31967040,31967759-31967848,31968014-31968121,
31968251-31968298
Length = 576
Score = 185 bits (450), Expect = 4e-47
Identities = 104/234 (44%), Positives = 140/234 (59%), Gaps = 7/234 (2%)
Frame = +2
Query: 8 GIQXKAITDVINIGIGGSDLGPLMVTEALKP------YANHLKVHFVSNIDGTHLAEVLK 169
G KA+T+V+++GIGGS LGPL V AL+ A ++ F++N+D +A +K
Sbjct: 161 GATGKALTNVVSVGIGGSFLGPLFVHAALQTDPEAAESAKGRQLRFLANVDPVDVARSIK 220
Query: 170 KLNPETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALSTNAEKVTAFG 349
L+PET L ++ SKTFTT ET+ NA + K W + S P AVA+H +A+STN E V FG
Sbjct: 221 DLDPETTLVVVVSKTFTTAETMLNARTLKEWIVSSL-GPDAVAKHMIAVSTNLELVEKFG 279
Query: 350 IDANNMFGFWDWVGGRYSLWSAIG-LSISLYIGHENFEKLLDGANSMDQHFVTAPLEKNA 526
ID N F FWDWVGGRYS+ SA+G L +SL G +K L+GA S+D+HF ++ EKN
Sbjct: 280 IDPKNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFPIVQKFLEGAASIDKHFRSSSFEKNI 339
Query: 527 PVILALLGVWYHNFYGAETHALLPYDQYLHRFAAYFQQGDMESNGKYXTRSGAR 688
P A+LPY Q L +FA + QQ MESNGK + G +
Sbjct: 340 P-------------------AILPYSQALEKFAPHIQQLSMESNGKGVSIDGVQ 374
>09_04_0439 -
17594131-17594271,17595018-17595100,17595199-17595355,
17595438-17595576,17595668-17595720,17596150-17596257,
17596345-17596413,17596505-17596570,17596651-17596794,
17597372-17597455,17597539-17597637,17597753-17597875,
17598283-17598831
Length = 604
Score = 99 bits (238), Expect = 2e-21
Identities = 76/226 (33%), Positives = 110/226 (48%), Gaps = 6/226 (2%)
Frame = +2
Query: 29 TDVINIGIGGSDLGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPETA--LFII 202
T +++IGIGGS LGP V+EAL P LK+ F+ N D + + +L PE A L I+
Sbjct: 195 TQILSIGIGGSALGPQFVSEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVIV 254
Query: 203 ASKTFTTQETITNASSAKTWF----LESAKDPSAVARHFVALSTNAEKVTAFGIDANNMF 370
SK+ T ET + F L+ +K AV + +L N ++ + F
Sbjct: 255 ISKSGGTPETRNGLLEVQKAFRDAGLDFSKQGVAVTQE-NSLLDNTARIEGW----LARF 309
Query: 371 GFWDWVGGRYSLWSAIGLSISLYIGHENFEKLLDGANSMDQHFVTAPLEKNAPVILALLG 550
+DWVGGR S SA+GL + G + +++L GA MD+ +++N +LAL
Sbjct: 310 PMFDWVGGRTSEMSAVGLLPAALQGID-IKEMLVGAALMDEETRNTVVKENPAALLALCW 368
Query: 551 VWYHNFYGAETHALLPYDQYLHRFAAYFQQGDMESNGKYXTRSGAR 688
W G + +LPY L + Y QQ MES GK G R
Sbjct: 369 YWASEGIGNKDMVVLPYKDSLLLLSRYLQQLVMESLGKEFDLDGNR 414
>08_02_1017 -
23616244-23616381,23616471-23616537,23617160-23617238,
23617330-23617486,23617581-23617719,23617820-23617872,
23618037-23618120,23618291-23618359,23618488-23618553,
23618657-23618800,23619331-23619414,23619498-23619596,
23620097-23620219,23620745-23621290
Length = 615
Score = 89.0 bits (211), Expect = 3e-18
Identities = 73/226 (32%), Positives = 107/226 (47%), Gaps = 6/226 (2%)
Frame = +2
Query: 29 TDVINIGIGGSDLGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPETA--LFII 202
T +++IGIGGS LGP V EAL P L + F+ N D + + +L PE A L I+
Sbjct: 194 TQILSIGIGGSSLGPQFVAEALAPDNPPLMIRFIDNTDPAGIDHQIAQLGPELASTLVIV 253
Query: 203 ASKTFTTQETITNASSAKTWF----LESAKDPSAVARHFVALSTNAEKVTAFGIDANNMF 370
SK+ T ET + F LE +K A+ + +L N ++ + F
Sbjct: 254 ISKSGGTPETRNGLLEVQKAFRDAGLEFSKQGVAITQE-NSLLDNTARIEGW----LARF 308
Query: 371 GFWDWVGGRYSLWSAIGLSISLYIGHENFEKLLDGANSMDQHFVTAPLEKNAPVILALLG 550
+DWVGGR S SA+GL + G + +++L GA MD+ +++N +LAL
Sbjct: 309 PMFDWVGGRTSEMSAVGLLPAALQGID-IKEMLVGAAQMDEETRNTEIKENPAALLALCW 367
Query: 551 VWYHNFYGAETHALLPYDQYLHRFAAYFQQGDMESNGKYXTRSGAR 688
W + G++ LL + Y QQ MES GK G R
Sbjct: 368 YWASDGIGSKDSLLL--------LSRYLQQLVMESLGKEFDLDGNR 405
>03_04_0044 +
16754638-16754676,16755472-16755598,16756325-16756451,
16756866-16757431,16757896-16758211,16758373-16758613,
16758734-16758823,16759343-16759780,16759877-16760185,
16760392-16760406
Length = 755
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 450 SCPMYSEMDRPIADHSEYLPPTQSQKP 370
S P Y+ M +P++ H+ YLPP P
Sbjct: 667 STPFYNMMGQPMSPHTAYLPPHNGHAP 693
>11_04_0474 +
18162538-18163731,18163800-18163855,18163951-18164011,
18164107-18165495,18166024-18166635,18166706-18166852,
18166941-18167209,18167322-18167412,18167500-18167757,
18168376-18168450,18168937-18168945
Length = 1386
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = -3
Query: 549 PNSAKITGAFFSSGAVTKCWSMELAPSRSFSKFSCPMYSEMDRPIAD-HSEY----LP-P 388
PN+ A S +++ E SFSK P + M P+ D H++Y LP P
Sbjct: 457 PNATSTNAAAPSGQVLSERLPFESGAGNSFSKVEIPAKNRMVSPLLDLHADYDENSLPSP 516
Query: 387 TQSQKP 370
T+ KP
Sbjct: 517 TRDSKP 522
>02_03_0341 -
17948124-17948183,17948417-17948499,17948668-17948761,
17948848-17948982,17949099-17949131,17949207-17949301,
17949394-17949439,17949517-17949597,17949874-17949927,
17950361-17950506,17952192-17952330
Length = 321
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +1
Query: 496 LRHRTAGEECSRDLSTVRSLVPQFLRSRDPCAAALRSISTQIRSVFPAGRYGEQWQVXD 672
L TA E SR++ TV ++ P F+ S D + I + P GRYGE +V D
Sbjct: 229 LTKTTAREFASRNI-TVNAVAPGFISS-DMTSQLGEEIEKKNLITIPLGRYGEPEEVAD 285
>04_03_0648 -
18393142-18393174,18393259-18393341,18393569-18393662,
18393746-18393880,18394190-18394222,18394302-18394396,
18394494-18394539,18394639-18394719,18395464-18395517,
18395809-18395951,18397645-18397804
Length = 318
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +1
Query: 496 LRHRTAGEECSRDLSTVRSLVPQFLRSRDPCAAALRSISTQIRSVFPAGRYGEQWQV 666
L A E SR+++ V ++ P F+ S D A + +I S P GRYG+ +V
Sbjct: 235 LTKTVAREYASRNIN-VNAIAPGFIAS-DMTAELGEDLEKKILSTIPLGRYGKPEEV 289
>02_05_0749 + 31468643-31469086
Length = 147
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +2
Query: 275 AKDPSAVARHFVALSTNAEKVTAFGIDANNMFGFWDWVGGRYSLWSAIGLSISLYIGHEN 454
A D A AR + AE+V + G++ W W GGR W + L +G
Sbjct: 68 ADDVEAAARRD---AMEAEEVCSHGMEGRAARWGWGWKGGRRDGWMDGDAACGLSLGFSG 124
Query: 455 FEKLLD 472
LLD
Sbjct: 125 VLGLLD 130
>01_01_0277 +
2274383-2274465,2274889-2274955,2275040-2275110,
2275550-2275667,2275755-2275828,2276094-2276149,
2276237-2276320,2276422-2276509,2276602-2276679,
2276814-2276870,2277074-2277578
Length = 426
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 453 FSCPMYSEMDRPIADHSEYLPPTQSQKPNMLLASIPNAVTFSA 325
F CPMY ++ +A + KP+++ AS P + F A
Sbjct: 75 FPCPMYGKVPLSLALSPRIISEVAKFKPDIIHASSPGIMVFGA 117
>03_06_0459 + 34085134-34086269,34086471-34086717
Length = 460
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/87 (26%), Positives = 33/87 (37%)
Frame = +1
Query: 400 FAVVRDRSVHLAVHRTRKLRETSGRSQFHGPALRHRTAGEECSRDLSTVRSLVPQFLRSR 579
FA+V V ++ + L +T+ +GP LRH T G L T +
Sbjct: 84 FALVGSNVVAVSTQKRTLLYDTAAAVVSNGPELRHATIGGTALILLGTRLYAMDNRPCEP 143
Query: 580 DPCAAALRSISTQIRSVFPAGRYGEQW 660
DPC L +T + GR W
Sbjct: 144 DPCFQVLLPPATPVAG--SGGRRRRHW 168
>02_01_0256 +
1680240-1680485,1680950-1681024,1681527-1681776,
1681910-1681995,1682669-1682771,1683490-1683602,
1684259-1684351
Length = 321
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 533 ILALLGVWYHNFYGAETHALLPYDQYLHRFAA 628
++ALLG+ + FYG E + Y+++ + F A
Sbjct: 220 VVALLGMLVYRFYGDELREMFGYEEHPYAFYA 251
>09_05_0007 -
20036981-20037159,20037690-20037943,20038103-20038355,
20038447-20038640,20039122-20039252,20039378-20039488,
20039834-20039932
Length = 406
Score = 27.9 bits (59), Expect = 9.1
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 89 ALKPYANHLKVHFVSNIDGTHLAEVLKK-LNPETALFIIASKTFTTQETITNASSAKTWF 265
A++P+ L V + G+ LA +K L+P ++ F T I A TWF
Sbjct: 271 AIQPFLPPLSVFVTALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFIAGYHLAGTWF 330
Query: 266 LESAKDPSAVAR 301
ESA D A+ R
Sbjct: 331 RESA-DVKALQR 341
>05_04_0147 - 18419864-18421297
Length = 477
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 374 FWDWVGGRYSLWSAIGLSISLYIGHENFEKLLDGANSMDQHFVTAPLEKNAPV 532
FW + G YS +GLS + +G N L GA S + + A L + P+
Sbjct: 268 FWSYENGAYSYLYLVGLS-GMRVGSNNLNML--GAGSGGRDPLVAYLSTSVPI 317
>04_03_0145 - 11799689-11800108
Length = 139
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 673 AFRSPKWNTPXGPSCGG 723
A SP W TP P CGG
Sbjct: 5 AAASPSWCTPMAPGCGG 21
>03_06_0354 -
33333634-33333840,33334106-33334213,33335384-33335557,
33335637-33335765,33335858-33336145,33336257-33336489,
33336607-33337435
Length = 655
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 254 KTWFLESAKDPSAVARHFVALSTNAE 331
KTW + K + VAR FVAL++ E
Sbjct: 430 KTWMSAAQKSSNVVARFFVALNSRKE 455
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,181,028
Number of Sequences: 37544
Number of extensions: 447340
Number of successful extensions: 1555
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -