BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0519 (749 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_19976| Best HMM Match : PGI (HMM E-Value=0) 314 7e-86 SB_37337| Best HMM Match : PGI (HMM E-Value=0) 163 3e-54 SB_28287| Best HMM Match : DUF202 (HMM E-Value=1.8) 33 0.33 SB_23689| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3 SB_22715| Best HMM Match : SAM_PNT (HMM E-Value=1.8) 29 4.0 SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3 SB_6488| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3 SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094) 29 5.3 SB_16259| Best HMM Match : AAA (HMM E-Value=0.43) 28 7.0 SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3 SB_24520| Best HMM Match : CFEM (HMM E-Value=1.2) 28 9.3 >SB_19976| Best HMM Match : PGI (HMM E-Value=0) Length = 664 Score = 314 bits (770), Expect = 7e-86 Identities = 143/229 (62%), Positives = 173/229 (75%) Frame = +2 Query: 5 RGIQXKAITDVINIGIGGSDLGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPE 184 +G K TDV+NIGIGGSDLGP M+ E L+ Y NHL +HFVSN+DG H+ E+LKK+NPE Sbjct: 113 KGYTNKPFTDVVNIGIGGSDLGPAMIVEGLEYYKNHLNLHFVSNVDGDHVNEILKKINPE 172 Query: 185 TALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALSTNAEKVTAFGIDANN 364 T LF+I SKTFTTQET++NA + + WFL+SA VA+HFVA+STN + VT FGI N Sbjct: 173 TTLFVIVSKTFTTQETLSNAQTIREWFLKSANIDD-VAKHFVAVSTNVKNVTEFGIAEEN 231 Query: 365 MFGFWDWVGGRYSLWSAIGLSISLYIGHENFEKLLDGANSMDQHFVTAPLEKNAPVILAL 544 +F WDWVGGR+SLWSA+GLSISL +G ENF KLL GAN MD+HF AP E+N PVILA+ Sbjct: 232 IFPMWDWVGGRFSLWSAVGLSISLSVGFENFNKLLKGANEMDKHFREAPFEENIPVILAM 291 Query: 545 LGVWYHNFYGAETHALLPYDQYLHRFAAYFQQGDMESNGKYXTRSGARS 691 L +WY+NF+ AET AL+PY QYL + A Y QQG MESNGK R S Sbjct: 292 LSIWYNNFFKAETEALIPYTQYLQKLAPYLQQGIMESNGKSIGRDDTLS 340 >SB_37337| Best HMM Match : PGI (HMM E-Value=0) Length = 391 Score = 163 bits (395), Expect(2) = 3e-54 Identities = 80/112 (71%), Positives = 90/112 (80%), Gaps = 1/112 (0%) Frame = +2 Query: 50 IGGSDLGPLMVTEALKPYANH-LKVHFVSNIDGTHLAEVLKKLNPETALFIIASKTFTTQ 226 + G D GPLMVTEAL+PY L VHFVSNIDGTHLA+ L +LNPET+LFIIASKTFTT Sbjct: 102 VDGKD-GPLMVTEALQPYGKKGLNVHFVSNIDGTHLAKTLAELNPETSLFIIASKTFTTI 160 Query: 227 ETITNASSAKTWFLESAKDPSAVARHFVALSTNAEKVTAFGIDANNMFGFWD 382 ETITNA+SA+ W L+ KD SAVA+HFVALSTN KVT FGI +NMF FWD Sbjct: 161 ETITNATSARKWLLDHLKDKSAVAKHFVALSTNEPKVTEFGISKDNMFAFWD 212 Score = 67.7 bits (158), Expect(2) = 3e-54 Identities = 26/41 (63%), Positives = 33/41 (80%) Frame = +2 Query: 488 DQHFVTAPLEKNAPVILALLGVWYHNFYGAETHALLPYDQY 610 D HF APLE N PVILALLG+WY+NF+GA++H + YDQ+ Sbjct: 213 DNHFKDAPLENNIPVILALLGIWYNNFFGAQSHGMFAYDQW 253 >SB_28287| Best HMM Match : DUF202 (HMM E-Value=1.8) Length = 206 Score = 32.7 bits (71), Expect = 0.33 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = +2 Query: 374 FWDWVGGRYSLWSAIGLSISLYIGHENFE 460 FW+WV Y+ W+ + S S + HE+ + Sbjct: 158 FWEWVRENYAFWTKLDASSSFTLSHEHLD 186 >SB_23689| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 172 Score = 30.7 bits (66), Expect = 1.3 Identities = 14/50 (28%), Positives = 24/50 (48%) Frame = +1 Query: 451 KLRETSGRSQFHGPALRHRTAGEECSRDLSTVRSLVPQFLRSRDPCAAAL 600 + R++ F GP+ HRT E + +++ P L S +PC A+ Sbjct: 66 RTRKSMSSPNFQGPSRAHRTPQEVWRPKIGRLQTEFPYLLGSTNPCPTAV 115 >SB_22715| Best HMM Match : SAM_PNT (HMM E-Value=1.8) Length = 996 Score = 29.1 bits (62), Expect = 4.0 Identities = 26/76 (34%), Positives = 33/76 (43%) Frame = +2 Query: 161 VLKKLNPETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALSTNAEKVT 340 VLK L+P + T + +I +SA F SAV R + STN E Sbjct: 198 VLKALHPIKNGEVYRMVTPLLRPSILGPTSAIVHFPNPGNLTSAVRRKKILYSTNKEIPV 257 Query: 341 AFGIDANNMFGFWDWV 388 GI AN GF DW+ Sbjct: 258 NIGIPAN--MGF-DWL 270 >SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1200 Score = 28.7 bits (61), Expect = 5.3 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +2 Query: 557 YHNFYGAETHALLPYDQYLHRFAAYFQQ 640 YH F + + L YDQ+ HR YF Q Sbjct: 52 YHIFISSSSCRSLRYDQHTHRQLTYFDQ 79 >SB_6488| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 135 Score = 28.7 bits (61), Expect = 5.3 Identities = 18/59 (30%), Positives = 29/59 (49%) Frame = +2 Query: 353 DANNMFGFWDWVGGRYSLWSAIGLSISLYIGHENFEKLLDGANSMDQHFVTAPLEKNAP 529 + N FG V R W G+S LYIG+E+ K+ ++ + V A ++ +AP Sbjct: 43 EINKEFGARPAVVKRKWKWLTSGVSQHLYIGNEDGTKITRNSSFIKSVPVPAEIQDDAP 101 >SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094) Length = 1671 Score = 28.7 bits (61), Expect = 5.3 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = +3 Query: 372 ASGIGSEADIRCGPRSVCPSRCTSDTKTSRNFWTEPIPWTSTSSPHRWRRMLP 530 A + S D C VC SR + + R+ +E T SPH R MLP Sbjct: 1110 APRLNSRTDRSCRSDIVCYSRSAAQREEYRDDSSESSAKTEPWSPHTARYMLP 1162 >SB_16259| Best HMM Match : AAA (HMM E-Value=0.43) Length = 538 Score = 28.3 bits (60), Expect = 7.0 Identities = 20/84 (23%), Positives = 35/84 (41%) Frame = -3 Query: 537 KITGAFFSSGAVTKCWSMELAPSRSFSKFSCPMYSEMDRPIADHSEYLPPTQSQKPNMLL 358 K GA + TK + +P RS F S + P+A YLP + ++ Sbjct: 179 KPVGAHNMAALNTKFAMLPTSPGRSSPSFFPIALSPLPTPLATEESYLPSDVTMAAIVVA 238 Query: 357 ASIPNAVTFSAFVDKATKCLATAE 286 + P AVT + + + + A+ + Sbjct: 239 TAKPIAVTGRSLIGQHPRRCASRD 262 >SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1102 Score = 27.9 bits (59), Expect = 9.3 Identities = 11/26 (42%), Positives = 12/26 (46%) Frame = +2 Query: 323 NAEKVTAFGIDANNMFGFWDWVGGRY 400 N FG+ NN GF DW G Y Sbjct: 449 NCNTSCPFGMGYNNSLGFCDWCPGNY 474 >SB_24520| Best HMM Match : CFEM (HMM E-Value=1.2) Length = 813 Score = 27.9 bits (59), Expect = 9.3 Identities = 19/68 (27%), Positives = 30/68 (44%) Frame = -3 Query: 537 KITGAFFSSGAVTKCWSMELAPSRSFSKFSCPMYSEMDRPIADHSEYLPPTQSQKPNMLL 358 K GA + TK + +P RS FS S++ P+A LP + ++ Sbjct: 399 KPVGAHNMAALNTKFAMLPTSPGRSSPSFSPIALSQLPTPLATEESDLPSDVTMAAIVVA 458 Query: 357 ASIPNAVT 334 ++ P AVT Sbjct: 459 SANPIAVT 466 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,472,659 Number of Sequences: 59808 Number of extensions: 476729 Number of successful extensions: 2248 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2244 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2034222073 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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