Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0519
(749 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19976| Best HMM Match : PGI (HMM E-Value=0) 314 7e-86
SB_37337| Best HMM Match : PGI (HMM E-Value=0) 163 3e-54
SB_28287| Best HMM Match : DUF202 (HMM E-Value=1.8) 33 0.33
SB_23689| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_22715| Best HMM Match : SAM_PNT (HMM E-Value=1.8) 29 4.0
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_6488| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094) 29 5.3
SB_16259| Best HMM Match : AAA (HMM E-Value=0.43) 28 7.0
SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_24520| Best HMM Match : CFEM (HMM E-Value=1.2) 28 9.3
>SB_19976| Best HMM Match : PGI (HMM E-Value=0)
Length = 664
Score = 314 bits (770), Expect = 7e-86
Identities = 143/229 (62%), Positives = 173/229 (75%)
Frame = +2
Query: 5 RGIQXKAITDVINIGIGGSDLGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPE 184
+G K TDV+NIGIGGSDLGP M+ E L+ Y NHL +HFVSN+DG H+ E+LKK+NPE
Sbjct: 113 KGYTNKPFTDVVNIGIGGSDLGPAMIVEGLEYYKNHLNLHFVSNVDGDHVNEILKKINPE 172
Query: 185 TALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALSTNAEKVTAFGIDANN 364
T LF+I SKTFTTQET++NA + + WFL+SA VA+HFVA+STN + VT FGI N
Sbjct: 173 TTLFVIVSKTFTTQETLSNAQTIREWFLKSANIDD-VAKHFVAVSTNVKNVTEFGIAEEN 231
Query: 365 MFGFWDWVGGRYSLWSAIGLSISLYIGHENFEKLLDGANSMDQHFVTAPLEKNAPVILAL 544
+F WDWVGGR+SLWSA+GLSISL +G ENF KLL GAN MD+HF AP E+N PVILA+
Sbjct: 232 IFPMWDWVGGRFSLWSAVGLSISLSVGFENFNKLLKGANEMDKHFREAPFEENIPVILAM 291
Query: 545 LGVWYHNFYGAETHALLPYDQYLHRFAAYFQQGDMESNGKYXTRSGARS 691
L +WY+NF+ AET AL+PY QYL + A Y QQG MESNGK R S
Sbjct: 292 LSIWYNNFFKAETEALIPYTQYLQKLAPYLQQGIMESNGKSIGRDDTLS 340
>SB_37337| Best HMM Match : PGI (HMM E-Value=0)
Length = 391
Score = 163 bits (395), Expect(2) = 3e-54
Identities = 80/112 (71%), Positives = 90/112 (80%), Gaps = 1/112 (0%)
Frame = +2
Query: 50 IGGSDLGPLMVTEALKPYANH-LKVHFVSNIDGTHLAEVLKKLNPETALFIIASKTFTTQ 226
+ G D GPLMVTEAL+PY L VHFVSNIDGTHLA+ L +LNPET+LFIIASKTFTT
Sbjct: 102 VDGKD-GPLMVTEALQPYGKKGLNVHFVSNIDGTHLAKTLAELNPETSLFIIASKTFTTI 160
Query: 227 ETITNASSAKTWFLESAKDPSAVARHFVALSTNAEKVTAFGIDANNMFGFWD 382
ETITNA+SA+ W L+ KD SAVA+HFVALSTN KVT FGI +NMF FWD
Sbjct: 161 ETITNATSARKWLLDHLKDKSAVAKHFVALSTNEPKVTEFGISKDNMFAFWD 212
Score = 67.7 bits (158), Expect(2) = 3e-54
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2
Query: 488 DQHFVTAPLEKNAPVILALLGVWYHNFYGAETHALLPYDQY 610
D HF APLE N PVILALLG+WY+NF+GA++H + YDQ+
Sbjct: 213 DNHFKDAPLENNIPVILALLGIWYNNFFGAQSHGMFAYDQW 253
>SB_28287| Best HMM Match : DUF202 (HMM E-Value=1.8)
Length = 206
Score = 32.7 bits (71), Expect = 0.33
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 374 FWDWVGGRYSLWSAIGLSISLYIGHENFE 460
FW+WV Y+ W+ + S S + HE+ +
Sbjct: 158 FWEWVRENYAFWTKLDASSSFTLSHEHLD 186
>SB_23689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 451 KLRETSGRSQFHGPALRHRTAGEECSRDLSTVRSLVPQFLRSRDPCAAAL 600
+ R++ F GP+ HRT E + +++ P L S +PC A+
Sbjct: 66 RTRKSMSSPNFQGPSRAHRTPQEVWRPKIGRLQTEFPYLLGSTNPCPTAV 115
>SB_22715| Best HMM Match : SAM_PNT (HMM E-Value=1.8)
Length = 996
Score = 29.1 bits (62), Expect = 4.0
Identities = 26/76 (34%), Positives = 33/76 (43%)
Frame = +2
Query: 161 VLKKLNPETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALSTNAEKVT 340
VLK L+P + T + +I +SA F SAV R + STN E
Sbjct: 198 VLKALHPIKNGEVYRMVTPLLRPSILGPTSAIVHFPNPGNLTSAVRRKKILYSTNKEIPV 257
Query: 341 AFGIDANNMFGFWDWV 388
GI AN GF DW+
Sbjct: 258 NIGIPAN--MGF-DWL 270
>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 557 YHNFYGAETHALLPYDQYLHRFAAYFQQ 640
YH F + + L YDQ+ HR YF Q
Sbjct: 52 YHIFISSSSCRSLRYDQHTHRQLTYFDQ 79
>SB_6488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 353 DANNMFGFWDWVGGRYSLWSAIGLSISLYIGHENFEKLLDGANSMDQHFVTAPLEKNAP 529
+ N FG V R W G+S LYIG+E+ K+ ++ + V A ++ +AP
Sbjct: 43 EINKEFGARPAVVKRKWKWLTSGVSQHLYIGNEDGTKITRNSSFIKSVPVPAEIQDDAP 101
>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
Length = 1671
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +3
Query: 372 ASGIGSEADIRCGPRSVCPSRCTSDTKTSRNFWTEPIPWTSTSSPHRWRRMLP 530
A + S D C VC SR + + R+ +E T SPH R MLP
Sbjct: 1110 APRLNSRTDRSCRSDIVCYSRSAAQREEYRDDSSESSAKTEPWSPHTARYMLP 1162
>SB_16259| Best HMM Match : AAA (HMM E-Value=0.43)
Length = 538
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/84 (23%), Positives = 35/84 (41%)
Frame = -3
Query: 537 KITGAFFSSGAVTKCWSMELAPSRSFSKFSCPMYSEMDRPIADHSEYLPPTQSQKPNMLL 358
K GA + TK + +P RS F S + P+A YLP + ++
Sbjct: 179 KPVGAHNMAALNTKFAMLPTSPGRSSPSFFPIALSPLPTPLATEESYLPSDVTMAAIVVA 238
Query: 357 ASIPNAVTFSAFVDKATKCLATAE 286
+ P AVT + + + + A+ +
Sbjct: 239 TAKPIAVTGRSLIGQHPRRCASRD 262
>SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1102
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 323 NAEKVTAFGIDANNMFGFWDWVGGRY 400
N FG+ NN GF DW G Y
Sbjct: 449 NCNTSCPFGMGYNNSLGFCDWCPGNY 474
>SB_24520| Best HMM Match : CFEM (HMM E-Value=1.2)
Length = 813
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = -3
Query: 537 KITGAFFSSGAVTKCWSMELAPSRSFSKFSCPMYSEMDRPIADHSEYLPPTQSQKPNMLL 358
K GA + TK + +P RS FS S++ P+A LP + ++
Sbjct: 399 KPVGAHNMAALNTKFAMLPTSPGRSSPSFSPIALSQLPTPLATEESDLPSDVTMAAIVVA 458
Query: 357 ASIPNAVT 334
++ P AVT
Sbjct: 459 SANPIAVT 466
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,472,659
Number of Sequences: 59808
Number of extensions: 476729
Number of successful extensions: 2248
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2244
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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