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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0519
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19976| Best HMM Match : PGI (HMM E-Value=0)                        314   7e-86
SB_37337| Best HMM Match : PGI (HMM E-Value=0)                        163   3e-54
SB_28287| Best HMM Match : DUF202 (HMM E-Value=1.8)                    33   0.33 
SB_23689| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_22715| Best HMM Match : SAM_PNT (HMM E-Value=1.8)                   29   4.0  
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_6488| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                29   5.3  
SB_16259| Best HMM Match : AAA (HMM E-Value=0.43)                      28   7.0  
SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_24520| Best HMM Match : CFEM (HMM E-Value=1.2)                      28   9.3  

>SB_19976| Best HMM Match : PGI (HMM E-Value=0)
          Length = 664

 Score =  314 bits (770), Expect = 7e-86
 Identities = 143/229 (62%), Positives = 173/229 (75%)
 Frame = +2

Query: 5   RGIQXKAITDVINIGIGGSDLGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPE 184
           +G   K  TDV+NIGIGGSDLGP M+ E L+ Y NHL +HFVSN+DG H+ E+LKK+NPE
Sbjct: 113 KGYTNKPFTDVVNIGIGGSDLGPAMIVEGLEYYKNHLNLHFVSNVDGDHVNEILKKINPE 172

Query: 185 TALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALSTNAEKVTAFGIDANN 364
           T LF+I SKTFTTQET++NA + + WFL+SA     VA+HFVA+STN + VT FGI   N
Sbjct: 173 TTLFVIVSKTFTTQETLSNAQTIREWFLKSANIDD-VAKHFVAVSTNVKNVTEFGIAEEN 231

Query: 365 MFGFWDWVGGRYSLWSAIGLSISLYIGHENFEKLLDGANSMDQHFVTAPLEKNAPVILAL 544
           +F  WDWVGGR+SLWSA+GLSISL +G ENF KLL GAN MD+HF  AP E+N PVILA+
Sbjct: 232 IFPMWDWVGGRFSLWSAVGLSISLSVGFENFNKLLKGANEMDKHFREAPFEENIPVILAM 291

Query: 545 LGVWYHNFYGAETHALLPYDQYLHRFAAYFQQGDMESNGKYXTRSGARS 691
           L +WY+NF+ AET AL+PY QYL + A Y QQG MESNGK   R    S
Sbjct: 292 LSIWYNNFFKAETEALIPYTQYLQKLAPYLQQGIMESNGKSIGRDDTLS 340


>SB_37337| Best HMM Match : PGI (HMM E-Value=0)
          Length = 391

 Score =  163 bits (395), Expect(2) = 3e-54
 Identities = 80/112 (71%), Positives = 90/112 (80%), Gaps = 1/112 (0%)
 Frame = +2

Query: 50  IGGSDLGPLMVTEALKPYANH-LKVHFVSNIDGTHLAEVLKKLNPETALFIIASKTFTTQ 226
           + G D GPLMVTEAL+PY    L VHFVSNIDGTHLA+ L +LNPET+LFIIASKTFTT 
Sbjct: 102 VDGKD-GPLMVTEALQPYGKKGLNVHFVSNIDGTHLAKTLAELNPETSLFIIASKTFTTI 160

Query: 227 ETITNASSAKTWFLESAKDPSAVARHFVALSTNAEKVTAFGIDANNMFGFWD 382
           ETITNA+SA+ W L+  KD SAVA+HFVALSTN  KVT FGI  +NMF FWD
Sbjct: 161 ETITNATSARKWLLDHLKDKSAVAKHFVALSTNEPKVTEFGISKDNMFAFWD 212



 Score = 67.7 bits (158), Expect(2) = 3e-54
 Identities = 26/41 (63%), Positives = 33/41 (80%)
 Frame = +2

Query: 488 DQHFVTAPLEKNAPVILALLGVWYHNFYGAETHALLPYDQY 610
           D HF  APLE N PVILALLG+WY+NF+GA++H +  YDQ+
Sbjct: 213 DNHFKDAPLENNIPVILALLGIWYNNFFGAQSHGMFAYDQW 253


>SB_28287| Best HMM Match : DUF202 (HMM E-Value=1.8)
          Length = 206

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 374 FWDWVGGRYSLWSAIGLSISLYIGHENFE 460
           FW+WV   Y+ W+ +  S S  + HE+ +
Sbjct: 158 FWEWVRENYAFWTKLDASSSFTLSHEHLD 186


>SB_23689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 451 KLRETSGRSQFHGPALRHRTAGEECSRDLSTVRSLVPQFLRSRDPCAAAL 600
           + R++     F GP+  HRT  E     +  +++  P  L S +PC  A+
Sbjct: 66  RTRKSMSSPNFQGPSRAHRTPQEVWRPKIGRLQTEFPYLLGSTNPCPTAV 115


>SB_22715| Best HMM Match : SAM_PNT (HMM E-Value=1.8)
          Length = 996

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 26/76 (34%), Positives = 33/76 (43%)
 Frame = +2

Query: 161 VLKKLNPETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALSTNAEKVT 340
           VLK L+P     +    T   + +I   +SA   F       SAV R  +  STN E   
Sbjct: 198 VLKALHPIKNGEVYRMVTPLLRPSILGPTSAIVHFPNPGNLTSAVRRKKILYSTNKEIPV 257

Query: 341 AFGIDANNMFGFWDWV 388
             GI AN   GF DW+
Sbjct: 258 NIGIPAN--MGF-DWL 270


>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 557 YHNFYGAETHALLPYDQYLHRFAAYFQQ 640
           YH F  + +   L YDQ+ HR   YF Q
Sbjct: 52  YHIFISSSSCRSLRYDQHTHRQLTYFDQ 79


>SB_6488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 353 DANNMFGFWDWVGGRYSLWSAIGLSISLYIGHENFEKLLDGANSMDQHFVTAPLEKNAP 529
           + N  FG    V  R   W   G+S  LYIG+E+  K+   ++ +    V A ++ +AP
Sbjct: 43  EINKEFGARPAVVKRKWKWLTSGVSQHLYIGNEDGTKITRNSSFIKSVPVPAEIQDDAP 101


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +3

Query: 372  ASGIGSEADIRCGPRSVCPSRCTSDTKTSRNFWTEPIPWTSTSSPHRWRRMLP 530
            A  + S  D  C    VC SR  +  +  R+  +E    T   SPH  R MLP
Sbjct: 1110 APRLNSRTDRSCRSDIVCYSRSAAQREEYRDDSSESSAKTEPWSPHTARYMLP 1162


>SB_16259| Best HMM Match : AAA (HMM E-Value=0.43)
          Length = 538

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/84 (23%), Positives = 35/84 (41%)
 Frame = -3

Query: 537 KITGAFFSSGAVTKCWSMELAPSRSFSKFSCPMYSEMDRPIADHSEYLPPTQSQKPNMLL 358
           K  GA   +   TK   +  +P RS   F     S +  P+A    YLP   +    ++ 
Sbjct: 179 KPVGAHNMAALNTKFAMLPTSPGRSSPSFFPIALSPLPTPLATEESYLPSDVTMAAIVVA 238

Query: 357 ASIPNAVTFSAFVDKATKCLATAE 286
            + P AVT  + + +  +  A+ +
Sbjct: 239 TAKPIAVTGRSLIGQHPRRCASRD 262


>SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1102

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 323 NAEKVTAFGIDANNMFGFWDWVGGRY 400
           N      FG+  NN  GF DW  G Y
Sbjct: 449 NCNTSCPFGMGYNNSLGFCDWCPGNY 474


>SB_24520| Best HMM Match : CFEM (HMM E-Value=1.2)
          Length = 813

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -3

Query: 537 KITGAFFSSGAVTKCWSMELAPSRSFSKFSCPMYSEMDRPIADHSEYLPPTQSQKPNMLL 358
           K  GA   +   TK   +  +P RS   FS    S++  P+A     LP   +    ++ 
Sbjct: 399 KPVGAHNMAALNTKFAMLPTSPGRSSPSFSPIALSQLPTPLATEESDLPSDVTMAAIVVA 458

Query: 357 ASIPNAVT 334
           ++ P AVT
Sbjct: 459 SANPIAVT 466


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,472,659
Number of Sequences: 59808
Number of extensions: 476729
Number of successful extensions: 2248
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2244
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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