Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0519
(749 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110500-9|CAE54920.1| 586|Caenorhabditis elegans Hypothetical ... 367 e-102
AL110500-8|CAB60430.1| 551|Caenorhabditis elegans Hypothetical ... 367 e-102
Z92826-7|CAD90171.2| 99|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z69792-6|CAA93669.2| 398|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z69790-5|CAA93657.2| 398|Caenorhabditis elegans Hypothetical pr... 30 2.0
AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical... 29 3.5
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 29 3.5
Z81095-1|CAB03158.1| 667|Caenorhabditis elegans Hypothetical pr... 29 4.7
>AL110500-9|CAE54920.1| 586|Caenorhabditis elegans Hypothetical
protein Y87G2A.8b protein.
Length = 586
Score = 367 bits (902), Expect = e-102
Identities = 171/227 (75%), Positives = 189/227 (83%)
Frame = +2
Query: 8 GIQXKAITDVINIGIGGSDLGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPET 187
G K ITDV+NIGIGGSDLGPLMVTE+LK Y VHFVSN+DGTH+AEV KKLN ET
Sbjct: 177 GYTGKKITDVVNIGIGGSDLGPLMVTESLKNYQIGPNVHFVSNVDGTHVAEVTKKLNAET 236
Query: 188 ALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALSTNAEKVTAFGIDANNM 367
LFIIASKTFTTQETITNA +AK WFL A D AVA+HFVALSTN K FGID NM
Sbjct: 237 TLFIIASKTFTTQETITNAETAKEWFLAKAGDAGAVAKHFVALSTNVTKAVEFGIDEKNM 296
Query: 368 FGFWDWVGGRYSLWSAIGLSISLYIGHENFEKLLDGANSMDQHFVTAPLEKNAPVILALL 547
F FWDWVGGRYSLWSAIGLSI+++IG +N+EKLLDGA S+D+HFV PLEKN PVILA++
Sbjct: 297 FEFWDWVGGRYSLWSAIGLSIAVHIGFDNYEKLLDGAFSVDEHFVNTPLEKNIPVILAMI 356
Query: 548 GVWYHNFYGAETHALLPYDQYLHRFAAYFQQGDMESNGKYXTRSGAR 688
GV Y+N YGAETHALLPYDQY+HRFAAYFQQGDMESNGK+ TR G R
Sbjct: 357 GVLYNNIYGAETHALLPYDQYMHRFAAYFQQGDMESNGKFVTRHGQR 403
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 690 VEYSTGPIXWGRXPGPNGQ 746
V+YSTGPI WG PG NGQ
Sbjct: 404 VDYSTGPIVWGE-PGTNGQ 421
>AL110500-8|CAB60430.1| 551|Caenorhabditis elegans Hypothetical
protein Y87G2A.8a protein.
Length = 551
Score = 367 bits (902), Expect = e-102
Identities = 171/227 (75%), Positives = 189/227 (83%)
Frame = +2
Query: 8 GIQXKAITDVINIGIGGSDLGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPET 187
G K ITDV+NIGIGGSDLGPLMVTE+LK Y VHFVSN+DGTH+AEV KKLN ET
Sbjct: 142 GYTGKKITDVVNIGIGGSDLGPLMVTESLKNYQIGPNVHFVSNVDGTHVAEVTKKLNAET 201
Query: 188 ALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALSTNAEKVTAFGIDANNM 367
LFIIASKTFTTQETITNA +AK WFL A D AVA+HFVALSTN K FGID NM
Sbjct: 202 TLFIIASKTFTTQETITNAETAKEWFLAKAGDAGAVAKHFVALSTNVTKAVEFGIDEKNM 261
Query: 368 FGFWDWVGGRYSLWSAIGLSISLYIGHENFEKLLDGANSMDQHFVTAPLEKNAPVILALL 547
F FWDWVGGRYSLWSAIGLSI+++IG +N+EKLLDGA S+D+HFV PLEKN PVILA++
Sbjct: 262 FEFWDWVGGRYSLWSAIGLSIAVHIGFDNYEKLLDGAFSVDEHFVNTPLEKNIPVILAMI 321
Query: 548 GVWYHNFYGAETHALLPYDQYLHRFAAYFQQGDMESNGKYXTRSGAR 688
GV Y+N YGAETHALLPYDQY+HRFAAYFQQGDMESNGK+ TR G R
Sbjct: 322 GVLYNNIYGAETHALLPYDQYMHRFAAYFQQGDMESNGKFVTRHGQR 368
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 690 VEYSTGPIXWGRXPGPNGQ 746
V+YSTGPI WG PG NGQ
Sbjct: 369 VDYSTGPIVWGE-PGTNGQ 386
>Z92826-7|CAD90171.2| 99|Caenorhabditis elegans Hypothetical
protein C18D11.6 protein.
Length = 99
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 575 LRRNCGTRLLTVLRSREHSSPAVR*RSAGPWNWLRP 468
L+ G LT + +P +R R GPW W RP
Sbjct: 29 LKEKVGDHALTWTKVEASQTPHIRTRRWGPWGWHRP 64
>Z69792-6|CAA93669.2| 398|Caenorhabditis elegans Hypothetical
protein F40E10.6 protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 461 KLLDGANSMDQHFVTAPLEKNAPVILALLGVWYHNFYGAETHALLPY 601
K DG S+DQ ++ L N + LAL G++ FY A L PY
Sbjct: 170 KYEDGNWSLDQGYIYITLVYNVSISLALYGMFL--FYAATRDLLSPY 214
>Z69790-5|CAA93657.2| 398|Caenorhabditis elegans Hypothetical
protein F40E10.6 protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 461 KLLDGANSMDQHFVTAPLEKNAPVILALLGVWYHNFYGAETHALLPY 601
K DG S+DQ ++ L N + LAL G++ FY A L PY
Sbjct: 170 KYEDGNWSLDQGYIYITLVYNVSISLALYGMFL--FYAATRDLLSPY 214
>AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32b protein.
Length = 216
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Frame = +1
Query: 529 RDLSTVRSLVPQFLRSRDPCAAALRSISTQIRSVFPAGRYGEQWQVXDAFRSPK-WNTPX 705
R ST V QF R R S Q+R + G YG+ V + + W P
Sbjct: 38 RVTSTSNEHVGQFRRPRYSADPTSNSTDLQLRPLDAHGAYGDVGSVYGIAQQKRIWQKPR 97
Query: 706 GPSCGGE 726
GP E
Sbjct: 98 GPDATSE 104
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Frame = +1
Query: 529 RDLSTVRSLVPQFLRSRDPCAAALRSISTQIRSVFPAGRYGEQWQVXDAFRSPK-WNTPX 705
R ST V QF R R S Q+R + G YG+ V + + W P
Sbjct: 206 RVTSTSNEHVGQFRRPRYSADPTSNSTDLQLRPLDAHGAYGDVGSVYGIAQQKRIWQKPR 265
Query: 706 GPSCGGE 726
GP E
Sbjct: 266 GPDATSE 272
>Z81095-1|CAB03158.1| 667|Caenorhabditis elegans Hypothetical
protein F59F4.1 protein.
Length = 667
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 44 IGIGGSDLGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPETALFI 199
+GI G+D G L+ + P L + N DGT++A KL T +F+
Sbjct: 240 LGINGNDNGFLLFDKVRIPRKALLMRYAKVNPDGTYIAPAHSKLGYGTMVFV 291
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,003,374
Number of Sequences: 27780
Number of extensions: 348193
Number of successful extensions: 1163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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