Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0519
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   7.1  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 73  GTQI*TPNTNVDHICYSLXLYTP 5
           G ++  PNTN+   C  L ++ P
Sbjct: 112 GEEMWNPNTNISEDCLYLNIWVP 134


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 73  GTQI*TPNTNVDHICYSLXLYTP 5
           G ++  PNTN+   C  L ++ P
Sbjct: 112 GEEMWNPNTNISEDCLYLNIWVP 134


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 575 LRRNCGTRLLTVLRSREHS 519
           +R +  T+ L V RSR HS
Sbjct: 334 IRESLDTQFLQVCRSRRHS 352


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +3

Query: 468 WTEPIPWTSTSSPHRWRRMLP 530
           WT  IPW        W R +P
Sbjct: 170 WTYTIPWALMPVMGVWGRFVP 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,088
Number of Sequences: 438
Number of extensions: 4030
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)