Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0519
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosoli...   220   9e-58
At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative...   109   3e-24
At1g64530.1 68414.m07315 RWP-RK domain-containing protein simila...    32   0.35 
At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger) fa...    31   1.1  
At2g05755.1 68415.m00619 integral membrane family protein contai...    30   1.4  
At5g40440.1 68418.m04904 mitogen-activated protein kinase kinase...    29   3.3  
At5g11000.1 68418.m01281 expressed protein                             28   5.8  
At4g37590.1 68417.m05320 phototropic-responsive NPH3 family prot...    28   5.8  
At2g32080.2 68415.m03921 PUR alpha-1 protein identical to PUR al...    28   5.8  
At2g32080.1 68415.m03920 PUR alpha-1 protein identical to PUR al...    28   5.8  
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ...    28   7.6  
At5g14330.1 68418.m01675 expressed protein                             28   7.6  
At2g35630.1 68415.m04369 microtubule organization 1 protein (MOR...    28   7.6  

>At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosolic
           (PGIC) identical to SP|P34795 Glucose-6-phosphate
           isomerase, cytosolic (EC 5.3.1.9) (GPI) (Phosphoglucose
           isomerase) (PGI) (Phosphohexose isomerase) (PHI)
           {Arabidopsis thaliana}; contains Pfam profile PF00342:
           glucose-6-phosphate isomerase
          Length = 560

 Score =  220 bits (537), Expect = 9e-58
 Identities = 116/226 (51%), Positives = 144/226 (63%), Gaps = 7/226 (3%)
 Frame = +2

Query: 8   GIQXKAITDVINIGIGGSDLGPLMVTEALKPYANHLK------VHFVSNIDGTHLAEVLK 169
           G   K + DVI IGIGGS LGPL V  AL+     L+      + F++NID   +A  + 
Sbjct: 141 GATGKPLKDVIAIGIGGSFLGPLFVHTALQTDPEALESAKGRQLRFLANIDPVDVARNIS 200

Query: 170 KLNPETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALSTNAEKVTAFG 349
            LNPET L ++ SKTFTT ET+ NA + + W + +A   SAVA+H VA+STN   V  FG
Sbjct: 201 GLNPETTLVVVVSKTFTTAETMLNARTLREW-ITAALGASAVAKHMVAVSTNLALVEKFG 259

Query: 350 IDANNMFGFWDWVGGRYSLWSAIG-LSISLYIGHENFEKLLDGANSMDQHFVTAPLEKNA 526
           ID NN F FWDWVGGRYS+ SA+G L +SL  G    EK L GA+S+DQHF + P EKN 
Sbjct: 260 IDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSMVEKFLKGASSIDQHFQSTPFEKNI 319

Query: 527 PVILALLGVWYHNFYGAETHALLPYDQYLHRFAAYFQQGDMESNGK 664
           PV+L LL VW  +F G    A+LPY Q L +FA + QQ  MESNGK
Sbjct: 320 PVLLGLLSVWNVSFLGYPARAILPYSQALEKFAPHIQQVSMESNGK 365


>At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative
           similar to glucose-6-phosphate isomerase [Spinacia
           oleracea] GI:3413511; contains Pfam profile PF00342:
           glucose-6-phosphate isomerase
          Length = 613

 Score =  109 bits (261), Expect = 3e-24
 Identities = 75/218 (34%), Positives = 110/218 (50%), Gaps = 6/218 (2%)
 Frame = +2

Query: 29  TDVINIGIGGSDLGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPETA--LFII 202
           T ++++GIGGS LGP  V EAL P    LK+ F+ N D   +   + +L PE A  L ++
Sbjct: 185 TQILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVVV 244

Query: 203 ASKTFTTQETITNASSAKTWFLES----AKDPSAVARHFVALSTNAEKVTAFGIDANNMF 370
            SK+  T ET       +  F E+    AK   A+ +   +L  N  ++  +       F
Sbjct: 245 ISKSGGTPETRNGLLEVQKAFREAGLNFAKQGVAITQE-NSLLDNTARIEGW----LARF 299

Query: 371 GFWDWVGGRYSLWSAIGLSISLYIGHENFEKLLDGANSMDQHFVTAPLEKNAPVILALLG 550
             +DWVGGR S+ SA+GL  +   G  N  ++L GA  MD+   T  ++ N   +LA+  
Sbjct: 300 PMYDWVGGRTSIMSAVGLLPAALQG-INVREMLTGAALMDEATRTTSIKNNPAALLAMCW 358

Query: 551 VWYHNFYGAETHALLPYDQYLHRFAAYFQQGDMESNGK 664
            W  N  G++   +LPY   L  F+ Y QQ  MES GK
Sbjct: 359 YWASNGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGK 396


>At1g64530.1 68414.m07315 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 841

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 445 SDVQRDGQTDRGPQRISASDPIPEAEHVVSVDTERG 338
           SD   + + D G +R    DPIPEA+ V   + +RG
Sbjct: 516 SDFMENNEVDDGVERFQTLDPIPEAKTVKKSERKRG 551


>At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 261

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -3

Query: 261 HVLAELALVIVSCVVNVLDAMMNSAVSGFSFFKTSARWVPSML 133
           H+LA+  LV++  ++ +    +++AV G  FF T A  VPS L
Sbjct: 201 HLLAKFPLVVIFLLMALYAIPVSAAVLGVYFFVTFALAVPSFL 243


>At2g05755.1 68415.m00619 integral membrane family protein contains
           Pfam PF00892: Integral membrane protein domain
          Length = 401

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 332 KVTAFGIDANNMFGFWDWVGGRYSLWSAIGLSISLYI 442
           KVT   I     F  W W G RYS    + LS +LY+
Sbjct: 73  KVTETEISPVTQFSSWIWSGSRYSGLLCMALSSTLYL 109


>At5g40440.1 68418.m04904 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK3) similar to NPK2 [Nicotiana
           tabacum] gi|862342|dbj|BAA06731; mitogen-activated
           protein kinase kinase (MAPKK) family, PMID:12119167
          Length = 520

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 83  TEALKPYANHLKVHFVSNIDG-THLAEVLKKLNPETALFIIASKTFTTQETITNASS 250
           T+ LK  A+ L +H+ S  DG   L    K L  ET++F  + K  T    I +A S
Sbjct: 360 TQRLKDLADMLTIHYYSLFDGFDDLWHHAKSLYTETSVFSFSGKHNTGSTEIFSALS 416


>At5g11000.1 68418.m01281 expressed protein
          Length = 389

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 423 RPIADHSEYLPPTQSQKPNMLLASIPNAVT 334
           RP ADH+   P   SQ P+ L +  PN  T
Sbjct: 7   RPTADHNHPPPQPPSQSPSPLSSGDPNLTT 36


>At4g37590.1 68417.m05320 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 580

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 460 ETSGRSQFHGPALRHRTAGEECSRDLSTVRSLVPQFLRSRDP 585
           E +G     G  L     G+    D+  ++SLV  FL+SRDP
Sbjct: 312 EVAGLKNRVGERLDEANLGDVLLYDVELMQSLVEVFLKSRDP 353


>At2g32080.2 68415.m03921 PUR alpha-1 protein identical to PUR
           alpha-1 GI:5081612 from [Arabidopsis thaliana]; contains
           Pfam profile: PF04845 PurA ssDNA and RNA-binding protein
          Length = 295

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 170 KLNPETALFIIASKTFTTQETITNASSAKTWFLE 271
           K NP      I+ KT  T+ TI   SS  +WFL+
Sbjct: 48  KENPRGRYLKISEKTSATRSTIIVPSSGISWFLD 81


>At2g32080.1 68415.m03920 PUR alpha-1 protein identical to PUR
           alpha-1 GI:5081612 from [Arabidopsis thaliana]; contains
           Pfam profile: PF04845 PurA ssDNA and RNA-binding protein
          Length = 296

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 170 KLNPETALFIIASKTFTTQETITNASSAKTWFLE 271
           K NP      I+ KT  T+ TI   SS  +WFL+
Sbjct: 48  KENPRGRYLKISEKTSATRSTIIVPSSGISWFLD 81


>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 675

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -3

Query: 435 SEMDRPIADHSEYLPPTQSQKPNMLLASIPNAVTFSAFVDKATKCLATAEGSLADSRN 262
           S   +P  D+S+     QSQ+ + L    P  ++F +F  +  K L       A S+N
Sbjct: 545 SSASKPNTDNSDSQTLKQSQQGSFLPLGPPKGISFLSFASEEQKTLNREPQKPASSKN 602


>At5g14330.1 68418.m01675 expressed protein 
          Length = 128

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -3

Query: 489 SMELAPSRSFSKFS--CPMYSEMDRPIADHS--EYLPPTQSQKPNMLLASIPNAVTFSAF 322
           ++++AP  S  +F+  C + + M      H+   +  P  +  P M  A  P+A TFSA+
Sbjct: 53  NIQMAPRSSLIRFAFICIVLAVMVMTAESHNGTHHHGPAMAPMPPMAKAPSPSAATFSAY 112

Query: 321 VDKATKCLATA 289
                  L  A
Sbjct: 113 PQLIATALVAA 123


>At2g35630.1 68415.m04369 microtubule organization 1 protein (MOR1)
           identical to microtubule organization 1 protein
           GI:14317953 from [Arabidopsis thaliana]
          Length = 1978

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 69  VPSWSQKH*SPMLIILRSISYLTSTAPTWPR 161
           VP W++K+      ++  I+Y++STA  +P+
Sbjct: 650 VPGWNEKNVQVQQQVIEIITYISSTAAKFPK 680


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,304,035
Number of Sequences: 28952
Number of extensions: 332843
Number of successful extensions: 1150
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)