Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0518
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0175 + 21513767-21513903,21534361-21535385,21537375-215375... 36 0.026
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 33 0.18
05_01_0143 - 944169-947273 31 0.74
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 31 0.98
06_02_0346 - 14837982-14838122,14838208-14838327,14838411-148385... 30 2.3
05_01_0020 + 143273-143592,144278-144371,144466-144537,144675-14... 30 2.3
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 30 2.3
03_06_0204 + 32341756-32341843,32341943-32342025,32342690-323427... 29 3.0
08_02_0095 - 12285976-12286037,12286111-12287229,12287494-122886... 29 3.9
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 29 3.9
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 29 3.9
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 29 3.9
08_02_0860 + 21970888-21971833,21973400-21974127 28 6.9
02_02_0233 + 8105765-8107840 28 6.9
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 28 6.9
10_08_0520 - 18495118-18498237 28 9.1
07_01_0279 + 2055310-2055541,2055916-2056235,2056734-2057213 28 9.1
>03_05_0175 +
21513767-21513903,21534361-21535385,21537375-21537547,
21537849-21538679
Length = 721
Score = 36.3 bits (80), Expect = 0.026
Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 2/187 (1%)
Frame = +1
Query: 64 DKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSL 243
++V E E + +E E+E+ ++ I++ + +R +E + V+E +
Sbjct: 56 EEVEEEEVEEEEEIEEEEVEEEIEEEEEEIEEEEEEVREEVQEAGEE-----VDEEQQGA 110
Query: 244 KSDLEKF-EVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTA 420
+++K E DE+ + P V + + + E ++ E H D ++S ++DI
Sbjct: 111 NEEMQKSKEDADESSKSAIP-VQKQEEDEAEKEIIEAKDEEQHGDK---LASQEHDIGEN 166
Query: 421 EIALRQGFQEVSDGIGKWYARTEQINELQ-ASLQHFQENFRRSNTKVE*NATFY*TS*HH 597
QG Q+V+DG A++E+ NE + S++H E ++ + N S H
Sbjct: 167 GDVDAQGVQQVADG-ETMEAKSEEQNEAKVTSMEHDIEEGDEKASREQGNRALPSCSDHL 225
Query: 598 RGPFCRG 618
RG C G
Sbjct: 226 RG-VCAG 231
>01_07_0374 +
43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/69 (24%), Positives = 34/69 (49%)
Frame = +1
Query: 340 EHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQ 519
++ T P ++A + +S ++ +I + GI K++ +QIN++Q +
Sbjct: 252 KNTTSAPIDKDNAREEISRLQKEILVMQTEKEFIKSSYESGIAKYWDLEKQINDMQEQVC 311
Query: 520 HFQENFRRS 546
HFQ+ F S
Sbjct: 312 HFQDKFDES 320
>05_01_0143 - 944169-947273
Length = 1034
Score = 31.5 bits (68), Expect = 0.74
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +1
Query: 370 EDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFRRS 546
E+A++ +S ++ +I + G+ K++ +QIN++Q + +FQE F S
Sbjct: 130 ENAQEEISRLQKEILVLQTQKEFLKSSYESGMAKYWDLEKQINDMQEEVCYFQEEFNES 188
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 295 RPLVDLRNPGPPQHQEHETQNPEHHEDAEK 384
RPL L +P PP Q ET+ E +++E+
Sbjct: 98 RPLPSLASPPPPTQQPQETEEQEQQQESEE 127
>06_02_0346 -
14837982-14838122,14838208-14838327,14838411-14838564,
14838793-14838866,14838962-14839095,14839207-14839326,
14843174-14843308,14843842-14843976,14844343-14845003,
14845103-14845264,14845348-14845510,14880834-14881021
Length = 728
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +1
Query: 196 VDIPVKVIVEEIKPSLKSDLEKFEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHED 375
+DIP + I++ P+++ L F VP+ L+ L + EH TQ H+D
Sbjct: 476 IDIPTQGIIQPTAPAVEPALPDFGVPN-------TLLALTAYVQDETAEHNTQGDSSHDD 528
Query: 376 AEKIVSSVKND 408
+ + S+ D
Sbjct: 529 DDNLSHSLPPD 539
>05_01_0020 +
143273-143592,144278-144371,144466-144537,144675-144786,
145179-145327,145484-145510,145931-145981
Length = 274
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Frame = +1
Query: 64 DKVPEAEDKPLNVVENLSSEQELIDQA-NTIKDIDNSLRANKKEVVDIPVKVIVEEIKPS 240
+ + +D+ +++++ + QE + ++ N DID + + ++ + +
Sbjct: 159 EDIDSLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSY 218
Query: 241 LKSDLEKFEVPDENEEIKRPLVDL-RNPGPPQHQEHETQNPEHHED 375
L+ D E D + E+ P P PP Q++ +P H+ED
Sbjct: 219 LQPDKES----DLDSELNLPAAPTGHTPAPPNRQQNLVLHPFHNED 260
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.9 bits (64), Expect = 2.3
Identities = 32/150 (21%), Positives = 71/150 (47%)
Frame = +1
Query: 79 AEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLE 258
AE+K + V ++ EL +++K+++ S + + + +++ K SL S+L+
Sbjct: 424 AEEKEMLVSKHSKCLTELEKAQSSVKELE-STNGDLNDKI-----AVLQNEKNSLSSELQ 477
Query: 259 KFEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 438
+ E EN L N Q E + +++ED E + S+++ND+ T + +
Sbjct: 478 QLEASFEN---------LGND-LEQELERISIMHKNNEDLELVNSNLQNDLATVQGQKNE 527
Query: 439 GFQEVSDGIGKWYARTEQINELQASLQHFQ 528
+ K + +QI+ LQ ++++ +
Sbjct: 528 AVASTLELGNKLEEKNQQISNLQEAVENLE 557
>03_06_0204 +
32341756-32341843,32341943-32342025,32342690-32342765,
32342876-32342943,32343001-32343045,32343308-32343392,
32344270-32344385,32344497-32344580,32345394-32345540,
32345845-32345956,32346027-32346146,32346338-32346411
Length = 365
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +1
Query: 334 HQEHETQNPEHH---EDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQIN 498
H+ + Q + H EDAEK+V SVK + E G +V G ++ +N
Sbjct: 152 HEHEDEQKKQEHTFNEDAEKMVKSVKQAMENGEGCRVYGVLDVQRVAGNFHISVHGLN 209
>08_02_0095 - 12285976-12286037,12286111-12287229,12287494-12288604,
12288695-12288757,12288851-12288913,12289268-12289318,
12289538-12289617,12290078-12290164,12290349-12290435,
12290889-12290975,12292106-12292308,12292756-12292922
Length = 1059
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = +1
Query: 82 EDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLEK 261
+D + + EQE Q I+D D AN K + IVE+I S K +E+
Sbjct: 954 QDSGIEIANAEQQEQEKDVQEEHIEDPDT---ANTKGRKPKRYRRIVEKIIESSKKKIEE 1010
Query: 262 FEVPDENEEIKRP 300
E +EN+ RP
Sbjct: 1011 QEDAEENQNKARP 1023
>06_03_0478 - 21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/84 (21%), Positives = 43/84 (51%)
Frame = +1
Query: 40 AARAASIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVI 219
A +A+ D++ + + ++ + + +ELI + + DNS + + V D
Sbjct: 1146 AGHSAAAQDELVKEGKEKMSADHSTAPPKELIKEGEENMNTDNSAAVHVEPVADEK---- 1201
Query: 220 VEEIKPSLKSDLEKFEVPDENEEI 291
+E+ +P + D E+ E+ +++EE+
Sbjct: 1202 MEDEEPDYEEDPEEVELYEDDEEM 1225
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 29.1 bits (62), Expect = 3.9
Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 1/152 (0%)
Frame = +1
Query: 79 AEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLE 258
+E K + ++ + E D+A T K +++ ++K+ ++ + E++ L
Sbjct: 1592 SELKYMEEIQTMQVETTEKDEALTTKMQEHANLVHEKDALEQQLL----EVRKELNDAYH 1647
Query: 259 KFEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 438
+E ++ D E E Q H + E VSS+K + EI +
Sbjct: 1648 TIANQEEQVSVREIKWDAYKKFSEDQLEAEQQ---HVAELEVQVSSLKQQLQETEIHYKH 1704
Query: 439 GFQEVSDGIGKWYARTE-QINELQASLQHFQE 531
++VS +W A E ++EL+A Q+ E
Sbjct: 1705 KEEQVSLREVQWEADQEHSVSELKAQRQYAAE 1736
>03_06_0448 - 34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 29.1 bits (62), Expect = 3.9
Identities = 24/100 (24%), Positives = 44/100 (44%)
Frame = +1
Query: 64 DKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSL 243
DK+P+ + ++ N++S + +A D D L KK+ D+P +V+ E
Sbjct: 897 DKIPQPLENAISD-SNMTSVFSGVPEAENA-DTDKGLFLAKKDSEDMPKEVVGAEGSQQD 954
Query: 244 KSDLEKFEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPE 363
+ EV DE+ E+ L P H + + + P+
Sbjct: 955 QFTTSTHEVVDEHNEVAEVEPVLAEPN--MHGQCDGEKPD 992
>08_02_0860 + 21970888-21971833,21973400-21974127
Length = 557
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 170 LLSMSLIVLAWSMSSCSLDKFSTTFKGLSSAS--GTLSGMEAARAASTNIVSNRAAC 6
LL +S L+WSMS+ S + T G +++S GT R+ +SN+ C
Sbjct: 99 LLDLSSDELSWSMSTTSSSSYQPTNAGAATSSHVGTGDARSDLRSWLGGALSNQDTC 155
>02_02_0233 + 8105765-8107840
Length = 691
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 361 EHHEDAEKIVSSVKNDINTAEIALRQ--GFQEVSDGIGKWYARTEQ 492
EH KI+ ++ D+ + ++LR + +D G W R EQ
Sbjct: 426 EHRSSTAKIIGFIRKDLTSGWVSLRSVADHRRFNDRRGHWTLRREQ 471
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 70 VPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIK 234
+ A+ K L++ E S EQEL +++ D+ L+AN + + +K +EE+K
Sbjct: 673 ISSADSKTLSL-EAESKEQELNSSKSSLDDLTAMLKANVDAINNFTIK--IEELK 724
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 403 NDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASL 516
+D+N + + LR+G + + D + W A E NE A L
Sbjct: 476 SDLNKSRV-LRKGLEHIPDSVRLWKAVVELANEEDARL 512
>07_01_0279 + 2055310-2055541,2055916-2056235,2056734-2057213
Length = 343
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 37 LAARAASIPDKVPEAEDKPLNVVENLSSEQELIDQANTIK 156
LA AA++P VP+A +E+ S+ ++++ NT++
Sbjct: 207 LAVAAAAVPAPVPDATSSITGSLESDSAGDDVVEYMNTLQ 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,862,404
Number of Sequences: 37544
Number of extensions: 318200
Number of successful extensions: 1256
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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