Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0518
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    29   0.035
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.3  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   1.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   1.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   1.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   4.0  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 29.5 bits (63), Expect = 0.035
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +1

Query: 184 KKEVVDIPVKVIVEEIKPSLKSDLEKFEVPDENEEI 291
           KKE+ DI  +V VEEI    K  L+ F++ D+N+++
Sbjct: 570 KKEIYDILPEVDVEEILGEAKV-LQNFDIKDKNKKV 604


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 140 WSMSSCSLDKFSTTFKGLSSASGTLSG 60
           W+M+  + D+++   KGLS    +++G
Sbjct: 141 WTMTMIAFDRYNVIVKGLSGKPLSING 167


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 140 WSMSSCSLDKFSTTFKGLSSASGTLSG 60
           W+M+  + D+++   KGLS    +++G
Sbjct: 107 WTMTMIAFDRYNVIVKGLSGKPLSING 133


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 140 WSMSSCSLDKFSTTFKGLSSASGTLSG 60
           W+M+  + D+++   KGLS    +++G
Sbjct: 17  WTMTMIAFDRYNVIVKGLSGKPLSING 43


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 82  EDKPLNVVENLSSEQELIDQANTIKDIDNSL 174
           E  P+ ++ENL +  E ID+    ++   S+
Sbjct: 333 ETMPMELIENLRNHPEYIDETRNYQECKCSI 363


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 253 LEKFEVPDENEEIKRPLVDLRNPGPPQHQEHETQN 357
           +E+ E  DE + I+ P+V   +  PP  +  ET +
Sbjct: 171 VEENETYDEFDTIRIPIVRSLSKSPPNDEGIETDS 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,661
Number of Sequences: 438
Number of extensions: 3776
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)