Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0518
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g46180.1 68415.m05742 intracellular protein transport protein... 34 0.088
At3g61390.2 68416.m06872 U-box domain-containing protein several... 33 0.15
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai... 32 0.47
At3g05110.1 68416.m00555 hypothetical protein 31 0.62
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi... 31 0.62
At5g65910.1 68418.m08296 BSD domain-containing protein contains ... 31 0.82
At5g54670.1 68418.m06807 kinesin-like protein C (KATC) 30 1.4
At5g44610.1 68418.m05466 DREPP plasma membrane polypeptide-relat... 30 1.4
At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related... 30 1.4
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 30 1.4
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 30 1.4
At2g44070.1 68415.m05481 eukaryotic translation initiation facto... 30 1.9
At1g23710.1 68414.m02993 expressed protein 30 1.9
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin... 29 2.5
At5g54050.1 68418.m06722 DC1 domain-containing protein 29 2.5
At5g38640.1 68418.m04673 eukaryotic translation initiation facto... 29 2.5
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ... 29 2.5
At2g36740.1 68415.m04507 YL1 nuclear family protein similar to Y... 29 2.5
At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /... 29 2.5
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 29 3.3
At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL) ide... 29 3.3
At1g48970.1 68414.m05489 eukaryotic translation initiation facto... 29 3.3
At4g16420.3 68417.m02486 transcriptional adaptor (ADA2b) identic... 29 4.4
At3g57390.2 68416.m06389 MADS-box protein (AGL18) agamous-like p... 29 4.4
At3g57390.1 68416.m06388 MADS-box protein (AGL18) agamous-like p... 29 4.4
At1g12380.1 68414.m01431 expressed protein 29 4.4
At5g35604.1 68418.m04242 hypothetical protein 28 5.8
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 28 5.8
At3g04010.1 68416.m00422 glycosyl hydrolase family 17 protein si... 28 5.8
At2g46250.1 68415.m05751 myosin heavy chain-related contains wea... 28 5.8
At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein si... 28 7.6
At5g13460.1 68418.m01549 calmodulin-binding family protein low s... 28 7.6
At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG sulfoquinovosylt... 28 7.6
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 28 7.6
>At2g46180.1 68415.m05742 intracellular protein transport protein
USO1-related similar to Intracellular protein transport
protein USO1 (Swiss-Prot:P25386) [Saccharomyces
cerevisiae]
Length = 725
Score = 34.3 bits (75), Expect = 0.088
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 118 SEQELIDQANTIKDIDNSLRANKKEVVDIPVKVI-VEEIKPSLKSDLEKFEVPDENEEIK 294
++++ + + +KD+D L ++KKE +I KV+ E I K+ + K E D+N +++
Sbjct: 493 AKEDAMKLSARLKDVDEQLESSKKEKEEITSKVLHAENIAAEWKNRVSKVE--DDNAKVR 550
Query: 295 RPL 303
R L
Sbjct: 551 RVL 553
>At3g61390.2 68416.m06872 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 435
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = +1
Query: 217 IVEEIKPSLKSDLEKFE-VPDENEEIKRPLVDLRN-PGPPQHQEHETQNPEHHEDAEKIV 390
++ +++ +E F + +E EE+K L ++ G + +E T N H E + +
Sbjct: 301 VIRKLQEKNNLSMETFRGIREEQEELKIKLREVSKLKGKREEEEASTSN--HREPPQYFI 358
Query: 391 SSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINEL 504
+ +DI GF + I +W+ R + + +
Sbjct: 359 CPITHDIMEDPHVAADGFTYEGEAISRWFERGHETSPM 396
>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
Pfam profile: PF00628: PHD-finger
Length = 704
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 521 CCKLAWSSLICSVRAYHFPIPSDTSW 444
C WS+ S R YHF IP DT W
Sbjct: 95 CRCTGWSNHFVSKRKYHFIIPIDTEW 120
>At3g05110.1 68416.m00555 hypothetical protein
Length = 372
Score = 31.5 bits (68), Expect = 0.62
Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 19/157 (12%)
Frame = +1
Query: 106 ENLSSEQELIDQA-NTIKDIDNSLRA--NKKEVVDIPVKVIVEEIKP-SLKS-DLEKFEV 270
E + E ELI+ + ++ +N LR K++ D+ K + E+ K LK +++ +
Sbjct: 53 ERMRKETELIETSLKQLEARENELREVEAKRKFFDLKEKELEEKEKELELKQRQVQERSI 112
Query: 271 PDENEEIKRPLVDLRNPGPPQHQEHET----------QNPEHHEDAEKIVSSVKNDINTA 420
D PL RN ++ +N E HE +V S ND
Sbjct: 113 QDGPSVDAEPLTQQRNHNDEDKEKDSASVLSASVQIIENDEDHEPVMCVVDSEFNDFRKT 172
Query: 421 EIALRQG----FQEVSDGIGKWYARTEQINELQASLQ 519
+ G + D + + Y R +++N+ Q+SLQ
Sbjct: 173 MSSFMAGQVWALYDGIDSMPRCYGRIKKVNKCQSSLQ 209
>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 452
Score = 31.5 bits (68), Expect = 0.62
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 349 TQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYART 486
T P HH D + VS +K+++ T + ++ FQ V D G+W RT
Sbjct: 20 TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64
>At5g65910.1 68418.m08296 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 432
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +1
Query: 310 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 465
L P + Q P+H E+ E +++ +KND R G ++S +
Sbjct: 64 LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115
>At5g54670.1 68418.m06807 kinesin-like protein C (KATC)
Length = 754
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/85 (22%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +1
Query: 67 KVPEAEDKPLNVVENLSSEQ-ELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSL 243
+V + D+ L V+ L +E + D + I +++ + + ++ + +++ E + +
Sbjct: 284 QVKDDRDRHLVEVKTLQTEATKYNDFKDAITELETTCSSQSTQIRQLQDRLVNSERRLQV 343
Query: 244 KSDLEKFEVPDENEEIKRPLVDLRN 318
SDL FE +E E+ K+ ++DL++
Sbjct: 344 -SDLSTFEKMNEYEDQKQSIIDLKS 367
>At5g44610.1 68418.m05466 DREPP plasma membrane polypeptide-related
contains Pfam profile: PF05558 DREPP plasma membrane
polypeptide
Length = 168
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Frame = +1
Query: 76 EAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDL 255
E E KP ++ E E++++ + + + V++PV EE KP+++ +
Sbjct: 50 EGETKPEEIIATGEKEIEIVEE-----------KKEEAKPVEVPVLAAAEEKKPAVEEEK 98
Query: 256 EKFEVPDEN---EEIKRPLVDLRNPGPPQHQE 342
+ V ++ EE K+P V+ + P + +E
Sbjct: 99 KTAPVEEKKPAVEEEKKPAVEEKKPVEEEKKE 130
>At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related
contains similarity to storekeeper protein [Solanum
tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
Protein of unknown function, DUF573
Length = 414
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/81 (23%), Positives = 35/81 (43%)
Frame = +1
Query: 46 RAASIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVE 225
+A +P PE D P ++ E ++AN +IDN +R + D+P
Sbjct: 167 QAKDVPSGEPETNDVPCEEQDDRDVPCEEQERANI--EIDNGVREKLDQAKDVPCVEQES 224
Query: 226 EIKPSLKSDLEKFEVPDENEE 288
E P ++ + E+ + +E
Sbjct: 225 EDVPCVEQERVSIEIDNGEKE 245
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 30.3 bits (65), Expect = 1.4
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 8/142 (5%)
Frame = +1
Query: 118 SEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLEKFEVPD---ENEE 288
S++ L ++ I+NS N +V+ + K EEIK S +KF PD N
Sbjct: 27 SQKPLFERYIHATGINNSSARNYYDVLGVSPKATREEIKKSFHELAKKFH-PDTNRNNPS 85
Query: 289 IKRPLVDLRNPGPPQHQEHET-QNPEHHEDAEKI----VSSVKNDINTAEIALRQGFQEV 453
KR ++R + +ET N E E+ +K+ V ND +E R
Sbjct: 86 AKRKFQEIR-------EAYETLGNSERREEYDKLQYRNSDYVNNDGGDSERFRRAYQSNF 138
Query: 454 SDGIGKWYARTEQINELQASLQ 519
SD K ++ + N+++ ++
Sbjct: 139 SDTFHKIFSEIFENNQIKPDIR 160
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 30.3 bits (65), Expect = 1.4
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 8/142 (5%)
Frame = +1
Query: 118 SEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLEKFEVPD---ENEE 288
S++ L ++ I+NS N +V+ + K EEIK S +KF PD N
Sbjct: 27 SQKPLFERYIHATGINNSSARNYYDVLGVSPKATREEIKKSFHELAKKFH-PDTNRNNPS 85
Query: 289 IKRPLVDLRNPGPPQHQEHET-QNPEHHEDAEKI----VSSVKNDINTAEIALRQGFQEV 453
KR ++R + +ET N E E+ +K+ V ND +E R
Sbjct: 86 AKRKFQEIR-------EAYETLGNSERREEYDKLQYRNSDYVNNDGGDSERFRRAYQSNF 138
Query: 454 SDGIGKWYARTEQINELQASLQ 519
SD K ++ + N+++ ++
Sbjct: 139 SDTFHKIFSEIFENNQIKPDIR 160
>At2g44070.1 68415.m05481 eukaryotic translation initiation factor
2B family protein / eIF-2B family protein similar to
SP|Q63186 Translation initiation factor eIF-2B delta
subunit (eIF-2B GDP-GTP exchange factor) {Rattus
norvegicus}; contains Pfam profile PF01008: Initiation
factor 2 subunit family
Length = 307
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 166 NSLRANKKEVVDIPVKVIVEEIKPSLKSDLEKF 264
N++R K + +P+ + E K SL SD+E+F
Sbjct: 47 NAIRFVKNRIAKLPITLSESEAKASLHSDIERF 79
>At1g23710.1 68414.m02993 expressed protein
Length = 295
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 205 PVKVIVEEIKPSLKSDLEKFEVPDENEEIKR 297
PVK I +E + D K P+E+EEIK+
Sbjct: 10 PVKCIADERLTEISMDFTKLGFPEEDEEIKK 40
>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 283
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +1
Query: 232 KPSLKSDLEKFEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDI 411
K ++ L+ ++ ++ EE + VDL +P P + +E E +N ++ ED +K K D
Sbjct: 64 KLTVTGALDPVKLREKLEEKTKKKVDLVSPQPKKEKEKENKN-KNDEDKKKSEEKKKPDN 122
Query: 412 N 414
N
Sbjct: 123 N 123
>At5g54050.1 68418.m06722 DC1 domain-containing protein
Length = 580
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 232 KPSLKSDLEKFEVPDENEEIKRPLVDLRNPGPPQHQEHE 348
K + LE +VP+E EEIK P + G H HE
Sbjct: 265 KKEVWDGLELEDVPEEEEEIKDPFKVINEKGDIVHFSHE 303
>At5g38640.1 68418.m04673 eukaryotic translation initiation factor
2B family protein / eIF-2B family protein similar to
SP|P41111 Translation initiation factor eIF-2B delta
subunit (eIF-2B GDP-GTP exchange factor) {Oryctolagus
cuniculus}; contains Pfam profile PF01008: Initiation
factor 2 subunit family
Length = 642
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 166 NSLRANKKEVVDIPVKVIVEEIKPSLKSDLEKF 264
N++R K + +P+ + E K +L+SD+E+F
Sbjct: 389 NAIRFVKNRIAKLPITLSESEAKATLQSDIERF 421
>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 488
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +1
Query: 250 DLEKFEVPDENEEIKRPLVDLRNPGPPQHQEHE 348
DLE +VPDE EEIK P + G H HE
Sbjct: 261 DLE--DVPDEEEEIKDPFKVINENGDIVHISHE 291
>At2g36740.1 68415.m04507 YL1 nuclear family protein similar to YL-1
protein (Transcription factor-like 1)
(Swiss-Prot:Q15906) [Homo sapiens]
Length = 379
Score = 29.5 bits (63), Expect = 2.5
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Frame = +1
Query: 166 NSLRANKKEVVDIPVKVIVEEIKPSLKSDLEKFEVPDENEEI---KRPLVDLRNPGPPQH 336
+++ N+KE+ D+P K ++ K + K +K +V + E I ++P +L N +
Sbjct: 89 DAVAVNEKELRDLPKKRLIYPGKTASKKKKKKTKVVSQLEYIPGDEKPGEELGNKEQEEK 148
Query: 337 QEHETQNPEHHEDAEKIVSSVKNDINTAE-IALRQGFQEVSDGI 465
+E+E Q E + + + AE ALR Q + I
Sbjct: 149 EENEAQEDMEGEKVIRKSTRTSVVVRQAERDALRAAIQATTKPI 192
>At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
SEC14-like protein 2 (Alpha-tocopherol associated
protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos
taurus}; similar to GI:807956 from [Saccharomyces
cerevisiae]; contains Pfam PF00650 : CRAL/TRIO domain;
contains Pfam PF03765 : CRAL/TRIO, N-terminus
Length = 573
Score = 29.5 bits (63), Expect = 2.5
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 2/133 (1%)
Frame = +1
Query: 46 RAASIPDKVPEAEDKPLNVV-ENLSSEQELIDQANT-IKDIDNSLRANKKEVVDIPVKVI 219
+ +IP V E E+ V E E+E+ + + + S+ ++E V + KV+
Sbjct: 26 KEVTIPTPVAEKEEVAAPVSDEKAVPEKEVTPEKEAPAAEAEKSVSVKEEETVVVAEKVV 85
Query: 220 VEEIKPSLKSDLEKFEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSV 399
V + K LE+F+ KR + P P +E + E E+ +
Sbjct: 86 VLTAEEVQKKALEEFKELVREALNKR---EFTAPVTPVKEEKTEEKKTEEETKEEEKTEE 142
Query: 400 KNDINTAEIALRQ 438
K + T E+ + +
Sbjct: 143 KKEETTTEVKVEE 155
>At3g54670.1 68416.m06049 structural maintenance of chromosomes (SMC)
family protein similar to SMC1 protein [Bos taurus]
GI:4235253, 14S cohesin SMC1 subunit (SMC protein)
[Xenopus laevis] GI:3328231; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 29.1 bits (62), Expect = 3.3
Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Frame = +1
Query: 55 SIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDID------NSLRANKKEVVDIPVKV 216
SI DK+P+ E + N++E + + + +A ++D N L E+VD K
Sbjct: 746 SIKDKLPQLEQEERNIIEEIDRIKPELSKAIARTEVDKRKTEMNKLEKRMNEIVDRIYKD 805
Query: 217 IVEEI-KPSLKSDLEKFEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVS 393
+ + P+++ E+ ++ +E + L ++Q QN + KI S
Sbjct: 806 FSQSVGVPNIRV-YEETQLKTAEKEAEERLELSNQLAKLKYQLEYEQNRDVGSRIRKIES 864
Query: 394 SVKN 405
S+ +
Sbjct: 865 SISS 868
Score = 28.3 bits (60), Expect = 5.8
Identities = 28/160 (17%), Positives = 70/160 (43%), Gaps = 6/160 (3%)
Frame = +1
Query: 106 ENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLEK-FEVPDEN 282
E L E E +++ + +L KK+ + K +K + K + EK + +E
Sbjct: 172 EELKKEYEGLEEKKASAEEKAALIYQKKKTIGNEKK-----LKKAQKEEAEKHLRLQEEL 226
Query: 283 EEIKRP-----LVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQ 447
+ +KR L ++ N +++ +++ + +D + + + + ++ + +
Sbjct: 227 KALKRERFLWQLYNIENDIEKANEDVDSEK-SNRKDVMRELEKFEREAGKRKVEQAKYLK 285
Query: 448 EVSDGIGKWYARTEQINELQASLQHFQENFRRSNTKVE*N 567
E++ K ++ ++ ++Q L F+E R K+E N
Sbjct: 286 EIAQREKKIAEKSSKLGKIQPELLRFKEEIARIKAKIETN 325
>At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL)
identical to cDNA tubulin folding cofactor A,
GI:20514256, SP|O04350 Tubulin-specific chaperone A
(Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin
cofactor A homolog) {Arabidopsis thaliana}
Length = 113
Score = 29.1 bits (62), Expect = 3.3
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Frame = +1
Query: 139 QANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLEKFE---------VPDENEEI 291
+ +T K I L + +KEV K + K + DL++ E +PD ++ +
Sbjct: 10 KTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRL 69
Query: 292 KRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAE 423
+ L DL++ + E + PE EDA+K V+ V+ T +
Sbjct: 70 ESALADLKSTLAELEETDEKEGPE-IEDAKKTVADVEKQFPTED 112
>At1g48970.1 68414.m05489 eukaryotic translation initiation factor
2B family protein / eIF-2B family protein similar to
guanine nucleotide exchange factor, eIF-2B, delta
subunit [Mus musculus] GI:529428; contains Pfam profile
PF01008: Initiation factor 2 subunit family
Length = 756
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +1
Query: 28 IFVLAARAASIPD-KVPEAEDKPLNVVENLSSEQELIDQANTIK-DIDNSLRANKKEVVD 201
I +L A +I D P +D +++ ++ + + + + N++R K ++
Sbjct: 449 IAMLQAFQEAIEDYSTPPMKDLTMDLTAKINGYVSFLIECRPLSMSMGNAIRFLKNQIRK 508
Query: 202 IPVKVIVEEIKPSLKSDLEKF 264
+PV + E K SL SD+ +F
Sbjct: 509 LPVNLSESEAKSSLCSDIGRF 529
>At4g16420.3 68417.m02486 transcriptional adaptor (ADA2b) identical
to transcriptional adaptor ADA2b [Arabidopsis thaliana]
gi|13591700|gb|AAK31320
Length = 486
Score = 28.7 bits (61), Expect = 4.4
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Frame = +1
Query: 91 PLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDI-PVKVIVEEIKPSLKSDLEKFE 267
PL + +++ + QA ID+ N KE P KV VE+ + D
Sbjct: 155 PLPDMSHVAGKNRKELQAMAKGRIDDKKEQNMKEEYPFSPPKVKVEDTQKESFVDRSFGG 214
Query: 268 VPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVK 402
+ + LV+L N +Q+ E +PE+ DAE++++ ++
Sbjct: 215 KKPVSTSVNNSLVELSN----YNQKREEFDPEYDNDAEQLLAEME 255
>At3g57390.2 68416.m06389 MADS-box protein (AGL18) agamous-like
protein 15 - Arabidopsis thaliana, PIR:S71200
Length = 195
Score = 28.7 bits (61), Expect = 4.4
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Frame = +1
Query: 112 LSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLEKF------EVP 273
+S E +L + +++KD + N+ E I K +EE L+ +E +V
Sbjct: 71 ISLENQLNESLHSVKDQKTQILLNQIERSRIQEKKALEE-NQILRKQVEMLGRGSGPKVL 129
Query: 274 DENEEIKRPLVDLRNPGPPQHQEHETQNPEHHED 375
+E + P D P +E E N EHH D
Sbjct: 130 NERPQDSSPEAD---PESSSSEEDENDNEEHHSD 160
>At3g57390.1 68416.m06388 MADS-box protein (AGL18) agamous-like
protein 15 - Arabidopsis thaliana, PIR:S71200
Length = 256
Score = 28.7 bits (61), Expect = 4.4
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Frame = +1
Query: 112 LSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLEKF------EVP 273
+S E +L + +++KD + N+ E I K +EE L+ +E +V
Sbjct: 132 ISLENQLNESLHSVKDQKTQILLNQIERSRIQEKKALEE-NQILRKQVEMLGRGSGPKVL 190
Query: 274 DENEEIKRPLVDLRNPGPPQHQEHETQNPEHHED 375
+E + P D P +E E N EHH D
Sbjct: 191 NERPQDSSPEAD---PESSSSEEDENDNEEHHSD 221
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/68 (25%), Positives = 35/68 (51%)
Frame = +1
Query: 298 PLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWY 477
PL +R+ + +PE +D +K+++ + + + A IAL + + ++G+ Y
Sbjct: 609 PLYLIRDSSGKYLPPFKCLSPEQEKDVDKLITRLVSR-DEAHIALMELMKWRTEGLDPMY 667
Query: 478 ARTEQINE 501
AR Q+ E
Sbjct: 668 ARAVQMKE 675
>At5g35604.1 68418.m04242 hypothetical protein
Length = 298
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 35 CSPHAQPPSRTRSPRPKI 88
CSP PPSRT P P +
Sbjct: 92 CSPRLSPPSRTMGPPPPV 109
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 58 IPDKVPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKK 189
I + E + P +V ENL + ID ++KD+ +L KK
Sbjct: 405 IESLLKETKIAPADVAENLMKKNTEIDADGSLKDLIQALEGKKK 448
>At3g04010.1 68416.m00422 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase GB:S12402 [Nicotiana sp],
GB:CAA03908 [Citrus sinensis], GB:S44364 [Lycopersicon
esculentum]
Length = 491
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 525 EMLQAGLELVNLLGTS-VPFSNTV*HFLEALTKSDFRCVNVIFDGRN 388
+++Q ++VN L + PF+ + FL SDF FDG+N
Sbjct: 189 DIIQEMTQIVNFLAQNKAPFTVNIYPFLSLYLSSDFPFEYAFFDGQN 235
>At2g46250.1 68415.m05751 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, muscle
(Swiss-Prot:P05661) [Drosophila melanogaster]
Length = 468
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +1
Query: 166 NSLRANKKEVVDIPVKVIVEEIKPSLKSDLEKFEVPDENEEIKRPL-VDLRNPGPPQHQE 342
+ LRA + V + +V ++E++ L+ + + + L + + + G H E
Sbjct: 350 SGLRAKPDDSVSMHQRVCLKELEEGLEKRTRRDNKLQLKKSSGQVLNLSMSSEGDKIHPE 409
Query: 343 HETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 438
+N + HE EK + KN + +R+
Sbjct: 410 SSPRNVDDHESQEKSRTFSKNHPRNVNVMIRE 441
>At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein
similar to lysosomal alpha-mannosidase SP:O09159 from
[Mus musculus]
Length = 1047
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +1
Query: 94 LNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSDLEKFEVP 273
+N+ S+E+ L Q + I NSL N+ E++ IPV ++ S + L+ +P
Sbjct: 479 MNISYCPSTEETLPGQKSLILVAYNSLGWNRTEIIRIPVNDAGLSVEDSSGNTLDAQYIP 538
Query: 274 DEN 282
+N
Sbjct: 539 MDN 541
>At5g13460.1 68418.m01549 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 443
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/74 (28%), Positives = 32/74 (43%)
Frame = +1
Query: 178 ANKKEVVDIPVKVIVEEIKPSLKSDLEKFEVPDENEEIKRPLVDLRNPGPPQHQEHETQN 357
A KK + + ++ + E+ K K+ IK+ L + PP EH T +
Sbjct: 2 AKKKGLFTVLKRIFISEVNSEKKEKRRKWTF--WKLRIKKRLPSIT--APP---EHRTSH 54
Query: 358 PEHHEDAEKIVSSV 399
H E E+IVS V
Sbjct: 55 ESHEEQKEEIVSDV 68
>At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG
sulfoquinovosyltransferase / sulfolipid synthase (SQD2)
identical to GI:20302857
Length = 510
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 34 VLAARAASIPDKVPEAEDKPLNVVENLSSEQELIDQANTI 153
V+AARA IPD +PE ++ + N ++ + + T+
Sbjct: 403 VVAARAGGIPDIIPEDQEGKTGFLFNPGDVEDCVTKLRTL 442
>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
to pre-mRNA splicing factor pre-mRNA splicing factor
prp1 (SP:Q12381) [Fission yeast]
Length = 1029
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 391 SSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASL 516
+ +++D+ LR+G + + D + W A E NE A +
Sbjct: 458 AKLEHDVENKSRVLRKGLEHIPDSVRLWKAVVELANEEDARI 499
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,606,878
Number of Sequences: 28952
Number of extensions: 263967
Number of successful extensions: 1198
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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