Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0517
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    31   0.23 
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    27   3.8  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    27   3.8  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    26   5.0  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   5.0  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   6.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.7  
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   8.7  

>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
 Frame = +2

Query: 122 ALIASSVMALYRVPLHR---MKTARTHFHEVGTELELLRL--KYDVTGPSPEPLSNYLDA 286
           AL AS   A   VP  R   +    + +  V  +LE  ++  K D +G     L  Y DA
Sbjct: 15  ALQASVASAYSEVPGKRSVVLNLQHSQYDHVARKLERTKVLNKRDSSGYPVLDLE-YTDA 73

Query: 287 Q-YYGVISIGTPPQSFKVVFDTGSSNLWVPSK 379
             Y+  +++G+  + + +  DTGS   WV +K
Sbjct: 74  GGYFANLTLGSNERVYSLTLDTGSPYTWVTAK 105


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -1

Query: 585 SPGSDTASANVWRRTLSPPTVTSSVER---KPERLPEPYCIANWVPFATY 445
           SP SDT S N+    LSP +   S  R   +P R  +   ++N +  A +
Sbjct: 143 SPASDTHSQNIHDEALSPSSFRVSRSRYFPRPHRSSKNLSVSNRLQLAVF 192


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 382 LFGRHPEVGGSGVEYHLERLRRRADTDHSVVLSIK 278
           +FG + E GG G     +R RR +D  H   +S++
Sbjct: 95  MFGMNFEAGGPGKNVPRDRKRRGSDVIHDYEISLE 129


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 95  MGKISLFFLALIASSVMALYRVPLHRMKTARTH 193
           MGK+S+ + A IAS+ + ++  P +R      H
Sbjct: 1   MGKLSMLYNAAIASTFVKVFLFPSYRSTDFEVH 33


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 598 GHEGKPGLRHGLGERL 551
           G EGKPG+  G+GE L
Sbjct: 72  GTEGKPGVSRGVGEEL 87


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -3

Query: 679 PCCXTPGVTWSTAIVLKAIPEDPVELGGHEGKPGLRHGLGERLAPHLEP 533
           P   +PG   +T    + +PE PV  GG    P  R  L   ++ H  P
Sbjct: 138 PFLTSPGNKQNTVDSFRPLPETPVSPGGSLVHPLPRPPLPSSVSSHSSP 186


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 57  ISKSPSCGF*KQQWERYLYF 116
           + K P CGF    W  +L+F
Sbjct: 644 VGKGPGCGFWAPSWRVWLFF 663


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 664 PGVTWSTAIVLKAIPEDPVELGGHEGKPG 578
           P V  S  +VL+  P++ + L GH  +PG
Sbjct: 354 PTVDSSNVLVLRVYPKEFIALKGHIKQPG 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,653
Number of Sequences: 5004
Number of extensions: 61217
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)