Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0517
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36362| Best HMM Match : Asp (HMM E-Value=0) 219 3e-57
SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09) 44 2e-04
SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0) 32 0.57
SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11) 29 5.3
SB_33649| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 7.0
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 28 7.0
SB_48315| Best HMM Match : GASA (HMM E-Value=1.8) 28 7.0
SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_49916| Best HMM Match : ig (HMM E-Value=8.5e-06) 28 9.3
>SB_36362| Best HMM Match : Asp (HMM E-Value=0)
Length = 326
Score = 219 bits (534), Expect = 3e-57
Identities = 108/155 (69%), Positives = 119/155 (76%), Gaps = 3/155 (1%)
Frame = +2
Query: 173 MKTARTHFHEVGTELELLRLKYDVT---GPSPEPLSNYLDAQYYGVISIGTPPQSFKVVF 343
M T R EVG +E L KY G PEPL NY+DAQYYG I+IGTPPQ F VVF
Sbjct: 1 MPTPRQSLKEVGISVEQLLGKYGGKYEGGDVPEPLINYMDAQYYGEITIGTPPQKFTVVF 60
Query: 344 DTGSSNLWVPSKKCHYTNIACLLHNKYDSRKSKTYVANGTQFAIQYGSGSLSGFLSTDDV 523
DTGSSNLWVPSKKC +TNIACLLH+KYDS KS TY NGT+FAI+YGSGSLSGFLS D V
Sbjct: 61 DTGSSNLWVPSKKCSWTNIACLLHDKYDSTKSSTYKKNGTEFAIRYGSGSLSGFLSIDTV 120
Query: 524 TVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILRDG 628
+VGG+ V+ QTFAEA+ EPGL FVAAKFDGIL G
Sbjct: 121 SVGGIDVKGQTFAEALKEPGLTFVAAKFDGILGMG 155
>SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)
Length = 278
Score = 43.6 bits (98), Expect = 2e-04
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 2/142 (1%)
Frame = +2
Query: 200 EVGTELELLRLKYDVTGPSPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSK 379
+ G ++ LLR K D + E L YY ++G+PPQ V+ DTGSSN V +
Sbjct: 11 KTGIKIPLLRTKRD-NNVAMENLKGRPGQGYYIASNLGSPPQRINVLVDTGSSNFAVAAS 69
Query: 380 KCHYTNIACLLHNKYDSRKSKTYVANGTQFAIQYGSGSLSGFLSTDDVT-VGGLKVRRQT 556
Y I H KS +Y ++ Y GS G L +D + V G V +
Sbjct: 70 AHPY--IPYYFH----IDKSTSYKDLNKPVSVPYTQGSWEGELGSDLIKFVDGPNVTLRV 123
Query: 557 FAEAVSEPGLAFV-AAKFDGIL 619
++ + F+ + ++GIL
Sbjct: 124 DVASILQSENFFINGSMWEGIL 145
>SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)
Length = 1465
Score = 31.9 bits (69), Expect = 0.57
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Frame = +2
Query: 428 SRKSKTYVAN-----GTQFAIQYGSGSLSGF-LSTDDVTV---GGLKVRRQTFAEAVSEP 580
+R S Y+ N G F + G++ G + D+T+ GGLK+ Q A+ +P
Sbjct: 537 ARASLVYIGNRRSSYGQTFGFMFRVGTVDGMQVDNGDITIEGEGGLKITTQLTAQGNPKP 596
Query: 581 GLAF 592
G+AF
Sbjct: 597 GVAF 600
>SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 31.1 bits (67), Expect = 1.00
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 161 PLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPLSNY 277
PL ++ R H ++ T LEL+ K + PS +PL++Y
Sbjct: 112 PLTWNESFRLHIKQIYTNLELITTKQHSSSPSRKPLNSY 150
>SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)
Length = 585
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 149 LYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEP 265
++ V L +K + ++++ GT+L + +LK T P P P
Sbjct: 244 IHDVLLTDLKPSSLYYYQYGTDLGMSKLKNFTTAPLPNP 282
>SB_33649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 541 GAAPDVRRGRVGARACLRGRQVRRDPPGWPSALSQW 648
G+ P R R G R CLR Q DP G ++L +W
Sbjct: 680 GSGPRSRTRRRGERTCLRNGQRDLDPQG-TASLRRW 714
>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1752
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 603 LAATKASPGSDTASANVWRRTLSPPTVTSSVERKPERLPEPYCIANWVP 457
+A T+ PG + NV+RRT+SP ER+ E + + ++ W+P
Sbjct: 1120 IAGTRR-PGLNPPKCNVFRRTMSP------CERQYELAIQRHVLSRWIP 1161
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 543 TLSPPTVTSS-VERKPERLPEPYCIANW 463
T SPP V S+ V R P R P+P NW
Sbjct: 1232 TESPPDVASTPVRRYPRRTPKPVRRVNW 1259
>SB_48315| Best HMM Match : GASA (HMM E-Value=1.8)
Length = 340
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 543 TLSPPTVTSS-VERKPERLPEPYCIANW 463
T SPP V S+ V R P R P+P NW
Sbjct: 166 TESPPDVASTPVRRYPRRTPKPVRRVNW 193
>SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 714 EKDRAARGPLSHHVVEHRGSHGP 646
E++R A P HH E RG+H P
Sbjct: 129 EEERGAHPPGQHHEEEERGAHPP 151
>SB_49916| Best HMM Match : ig (HMM E-Value=8.5e-06)
Length = 465
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 543 TLSPPTVTSSVERKPERLPEP-YCIANWVPFATYVLDLRLSYLLCSKQAMLV*WHF 379
T+SPP+ S+V + + P P I V + VL + L LC ++ + W F
Sbjct: 96 TVSPPSAGSTVSTRQVKQPPPLLMIVGSVVGSILVLAIVLGLFLCLRRKKGLSWEF 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,229,691
Number of Sequences: 59808
Number of extensions: 528908
Number of successful extensions: 1854
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1852
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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