Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0517
(750 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 25 0.76
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 25 1.0
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 24 1.3
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 24 1.3
AY545000-1|AAS50159.2| 126|Apis mellifera profilin protein. 23 4.0
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 4.0
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 22 5.3
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 22 7.1
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 21 9.3
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 9.3
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 21 9.3
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 25.0 bits (52), Expect = 0.76
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -2
Query: 434 CGCRTCCAANKRCWCSGTFWKAPRGWRIRCRIPP*TTAAAC 312
C C+TC + K C+ P + + R+PP T C
Sbjct: 435 CECKTCNSKTKCCFAQDD-GLCPYTLKHKIRVPPGTPIYEC 474
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.0
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +2
Query: 356 SNLWVPSKKCHYTNIACL---LHNKYDSRKSKTYVAN 457
SN + P CH +IAC + K D R KT N
Sbjct: 354 SNGYTPVLDCHTAHIACKFADIKEKCDRRNGKTTEEN 390
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.3
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +2
Query: 356 SNLWVPSKKCHYTNIACL---LHNKYDSRKSKTYVAN 457
SN + P CH +IAC + K D R KT N
Sbjct: 354 SNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEEN 390
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 24.2 bits (50), Expect = 1.3
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +2
Query: 356 SNLWVPSKKCHYTNIACL---LHNKYDSRKSKTYVAN 457
SN + P CH +IAC + K D R KT N
Sbjct: 65 SNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEEN 101
>AY545000-1|AAS50159.2| 126|Apis mellifera profilin protein.
Length = 126
Score = 22.6 bits (46), Expect = 4.0
Identities = 8/36 (22%), Positives = 20/36 (55%)
Frame = +2
Query: 77 RLLKTTMGKISLFFLALIASSVMALYRVPLHRMKTA 184
R+++ +GK+ + + + V++LY P+ + A
Sbjct: 76 RVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAA 111
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.6 bits (46), Expect = 4.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 597 ATKASPGSDTASANVWRRTLSPPTVTSS 514
+ KA PGS A + ++ LSP + SS
Sbjct: 893 SVKAEPGSIMAMSESSKKVLSPGELLSS 920
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 22.2 bits (45), Expect = 5.3
Identities = 8/26 (30%), Positives = 12/26 (46%)
Frame = -3
Query: 664 PGVTWSTAIVLKAIPEDPVELGGHEG 587
P + W A+ + +PED H G
Sbjct: 180 PAIVWWRAVRTEEVPEDKCPFTEHLG 205
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 21.8 bits (44), Expect = 7.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 684 SRDLVQPGLSRSXSTGD 734
SRDL +PG S GD
Sbjct: 6 SRDLSKPGCDEQTSRGD 22
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 21.4 bits (43), Expect = 9.3
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 659 GHMVHCDSAEGHP 621
GHM H + GHP
Sbjct: 120 GHMGHTPTPNGHP 132
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.4 bits (43), Expect = 9.3
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +3
Query: 651 HVTPGVXQHGGSRDLVQPGLSRSXSTG 731
HV PG LV PG +S TG
Sbjct: 1013 HVLPGKTLLASQIKLVSPGQIKSLLTG 1039
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 21.4 bits (43), Expect = 9.3
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 98 GKISLFFLALIASSVMALYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPL 268
GK+++ + S + ++ V L + VG +E+ K DVTG P PL
Sbjct: 289 GKLNVNEFYMAFSKLYSVSVVSLDKSLEVNHISARVGDNVEI---KCDVTGTPPPPL 342
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,801
Number of Sequences: 438
Number of extensions: 5067
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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