Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0515
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   6.0  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    26   6.0  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   7.9  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    25   7.9  

>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/55 (27%), Positives = 20/55 (36%)
 Frame = +2

Query: 131 APNLPERNSNANDRGERSVTALVDSYQQRMSGSWQGKDANRNTTWQQERQNNNYT 295
           A +  E N +  +  E S   L  +   RMSG W          WQ     N Y+
Sbjct: 119 AMDAAEANFSPPNSTEHSWLELTQAAFNRMSGRWDSSTCGGGLRWQAFAWLNGYS 173


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +2

Query: 188 TALVDSYQQRMSGSWQGKDANRNTTWQQERQNNNYTNVET 307
           T+  +S  +    + Q +D  +N+T  ++ +NNN +++ T
Sbjct: 688 TSTSESEDEETDDTSQEEDNEKNSTPDEDTENNNTSSIST 727


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
 Frame = +3

Query: 21  LHQVTERRRGPASLTADG--APGNDPPASRI----DRQLYQNEPQTSPNGI-QMQTTEAR 179
           LH+++E     +   +D   AP + P A R+     R+L Q E + + NG       E+R
Sbjct: 565 LHKLSEPLHDDSRQNSDHNFAPHSRPIAIRVATASQRELEQTEKRKAKNGAANASNMESR 624

Query: 180 DL*PRWWIATSRECQGRGRERTLTGTQHGSKRDRTITT 293
                    T R  +  G+ER L+  +  S++ +T+T+
Sbjct: 625 SSENE----THRFKKFYGKERELSNNEFPSRQTKTVTS 658


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 30  VTERRRGPASLTADGAPGNDPPASRIDRQLYQNEPQTSPNGIQMQTTEARDL 185
           VTE  +     TA G   + P  ++ID Q+    P T  + ++ +  +ARD+
Sbjct: 204 VTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDI 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,963
Number of Sequences: 5004
Number of extensions: 26353
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)