Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0515
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794...    30   1.5  
02_05_1009 - 33472588-33472711,33472726-33472895                       30   1.5  
04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158     28   6.2  
09_06_0183 - 21406474-21406636,21407412-21407956                       28   8.2  
03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470...    28   8.2  

>11_02_0065 -
           7938007-7938393,7939292-7939435,7940597-7940665,
           7940762-7940809,7941488-7941584,7941688-7941767,
           7941841-7941912,7942256-7942350,7943903-7943984,
           7945176-7945209,7945255-7945262,7945657-7946058
          Length = 505

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/87 (27%), Positives = 33/87 (37%)
 Frame = +3

Query: 9   HQFRLHQVTERRRGPASLTADGAPGNDPPASRIDRQLYQNEPQTSPNGIQMQTTEARDL* 188
           HQ   HQ +  R     +   G P ++ PA    +Q  Q +PQ  P          +   
Sbjct: 417 HQQHNHQNSNNRNAAHPV---GTPPSNHPAKNEQQQQAQPQPQPQPQPQPPAGANKQPPG 473

Query: 189 PRWWIATSRECQGRGRERTLTGTQHGS 269
           PR    T     GRG+ +T T T   S
Sbjct: 474 PRMPDGTRGFAMGRGKPQTSTTTPSAS 500


>02_05_1009 - 33472588-33472711,33472726-33472895
          Length = 97

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 132 PQTSPNGIQMQTTEARDL*PRWWIAT-SRECQGRGRERTLTGTQHGSKRDRTITTQTWRL 308
           P  SP+G +      R    R WI T +    GR   R L   + G+KR RT   + W+ 
Sbjct: 24  PHQSPSGSKCDKATKRAAIFRTWIHTCTLATDGRLSARRLIPEKDGAKRLRTSVKERWK- 82

Query: 309 RTSTRAR 329
           R S  +R
Sbjct: 83  RDSRNSR 89


>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
          Length = 974

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
 Frame = +3

Query: 48  GPASLTADGAPGNDPPASRIDRQLYQNEPQTSP--NGIQMQTTEARDL*PRWWIATSREC 221
           G AS   DG PG   PA    ++  ++ P  SP   G  ++ +  R   P   + TS+  
Sbjct: 301 GRASGPRDGGPGGSRPADARGKRKQEDTPSPSPPRGGGAVRASSRR---PEGAVPTSQPE 357

Query: 222 QGRGRE--RTLTGTQHGSKRDRTITTQTWRL-RTSTRARLHTEVVEAVPGRRP 371
             R ++  R + GT+    R   I+   W   R   R+R     + +  G RP
Sbjct: 358 GERKKKRLRKMGGTE--PCRGNLISPSRWSFSRPPRRSRRALPAIPSPAGLRP 408


>09_06_0183 - 21406474-21406636,21407412-21407956
          Length = 235

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +3

Query: 210 SRECQGRGRERTLTGTQHGSKRDRTITTQTWRLRTSTRARLHTEVVEAVPGRRPWLVA 383
           +  C+G GRE   +  +  ++R+R      +R   ST   +H    EA P  RP LVA
Sbjct: 52  NNSCKGDGRENERSSGKKAAQRER---RGAYRRPRSTTVGIHRVGAEATP-PRPSLVA 105


>03_01_0643 -
           4708245-4708355,4708456-4708800,4709124-4709700,
           4709780-4710462,4710618-4710980,4712199-4712530,
           4712856-4713048,4713748-4713790,4713964-4714052,
           4714186-4714301,4714816-4714935,4715538-4715577
          Length = 1003

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 173 GERSVTALVDSYQQRMSGSWQGKDANR-NTTWQQERQNN 286
           GE SV+     Y +  SGS+QG  A   NT +    Q+N
Sbjct: 184 GESSVSGQASEYDETESGSYQGLQATAPNTGFYSHGQDN 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,227,946
Number of Sequences: 37544
Number of extensions: 216574
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)