Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0515
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.055
SB_42240| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_46824| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_27222| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_19780| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  
SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  
SB_39439| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   8.4  

>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 207 TSRECQGRGRERTLTGTQHGSK-RDRTITTQTWRLRT--STRARLHTEVVEAVPGR 365
           T+   +GRG  R  TGT+  ++ R R+  T   R RT  STR R HT   E    R
Sbjct: 241 TAASARGRGNRRGRTGTRSSTRGRSRSTATSRGRTRTRTSTRRRSHTSSREGTRSR 296


>SB_42240| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 258 QHGSKRDRTITTQTWRLRTSTRARLHTEVVEAVPGRRPWLVA 383
           QH  K+ R + TQ W L+ +T+     E   AV   R W++A
Sbjct: 127 QHEEKQVR-VQTQYWGLKNNTKTNSKFEKKNAVTSIRTWVIA 167


>SB_46824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
 Frame = +2

Query: 137 NLPERNSNANDRGERSVTALVDSYQQRMSG------SWQGKDANRNTTWQQERQNNNYTN 298
           N  + NSN N R  +  +    SY   ++G      S   KD+N N    +   NNN +N
Sbjct: 8   NSDKNNSNNNKRNSKDSSINKASYNNSINGNNNNNKSNDNKDSNNNNDRNKNNNNNNNSN 67


>SB_27222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 234 RERTLTGTQHGSKRDRTITTQTWRLRTSTRAR 329
           R  + TGT  G  RD    T  WR+R  TR +
Sbjct: 32  RRLSPTGTTSGDVRDALRPTPNWRIRRITRRK 63


>SB_19780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 195 WWIATSRECQGRGRERTLTGTQHGSKRDRTITTQTW 302
           +W  TS E   +  ER  TGT++G+     +TT TW
Sbjct: 73  FWFRTSTELYLQIPERG-TGTKYGASTYSNLTTNTW 107


>SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
 Frame = +2

Query: 137 NLPERNSNANDRGERSVTALVDS------YQQRMSGSWQGKDANRNTTWQQERQNNNYTN 298
           N    N+N+ND    + T    +       QQ ++ S    D N +        NNNY N
Sbjct: 206 NNNSNNNNSNDHTATTTTPTAKTTPATVLVQQNINSSNNNNDQNNDHNNNNNNNNNNYNN 265

Query: 299 VETSH 313
              +H
Sbjct: 266 HNINH 270


>SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +3

Query: 51  PASLTADGAPGNDPPASRIDRQLYQNEPQTSPNGIQMQTTEARDL*PRWWIA-TSRECQG 227
           P +  A G PG  PPA    +Q Y   P T    +Q+  ++A  L   W  + T+  C G
Sbjct: 34  PPAYNAQGYPGTPPPAV-YSQQPYYGPPTTQQTFVQV--SKAAIL---WTTSNTTNICTG 87

Query: 228 RGRERTLTGTQHGSKRDRTI 287
           +     +   QH +   R++
Sbjct: 88  QYGNHNMDHQQHNNNLYRSV 107


>SB_39439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 195 WWIATSRECQGRGRERTLTGTQHGSKRDRTITTQTW 302
           +W  TS E   +  ER  TGT++G+     +TT TW
Sbjct: 129 FWFRTSTELYLQIPERG-TGTRYGASTYSNLTTDTW 163


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 209  QQRMSGSWQGKDANRNTTWQQERQNNNYTNVETSH 313
            Q R  G+W  +  NRN   Q  R NNN   V   +
Sbjct: 3034 QGRYRGAWSARHNNRNQYLQVFRGNNNRNTVRRQY 3068


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,976,388
Number of Sequences: 59808
Number of extensions: 241375
Number of successful extensions: 756
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)