BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0515 (700 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055 SB_42240| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1 SB_46824| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6 SB_27222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 SB_19780| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 SB_39439| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 8.4 >SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 574 Score = 35.1 bits (77), Expect = 0.055 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +3 Query: 207 TSRECQGRGRERTLTGTQHGSK-RDRTITTQTWRLRT--STRARLHTEVVEAVPGR 365 T+ +GRG R TGT+ ++ R R+ T R RT STR R HT E R Sbjct: 241 TAASARGRGNRRGRTGTRSSTRGRSRSTATSRGRTRTRTSTRRRSHTSSREGTRSR 296 >SB_42240| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 183 Score = 29.9 bits (64), Expect = 2.1 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +3 Query: 258 QHGSKRDRTITTQTWRLRTSTRARLHTEVVEAVPGRRPWLVA 383 QH K+ R + TQ W L+ +T+ E AV R W++A Sbjct: 127 QHEEKQVR-VQTQYWGLKNNTKTNSKFEKKNAVTSIRTWVIA 167 >SB_46824| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 103 Score = 29.1 bits (62), Expect = 3.6 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 6/60 (10%) Frame = +2 Query: 137 NLPERNSNANDRGERSVTALVDSYQQRMSG------SWQGKDANRNTTWQQERQNNNYTN 298 N + NSN N R + + SY ++G S KD+N N + NNN +N Sbjct: 8 NSDKNNSNNNKRNSKDSSINKASYNNSINGNNNNNKSNDNKDSNNNNDRNKNNNNNNNSN 67 >SB_27222| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 118 Score = 27.9 bits (59), Expect = 8.4 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +3 Query: 234 RERTLTGTQHGSKRDRTITTQTWRLRTSTRAR 329 R + TGT G RD T WR+R TR + Sbjct: 32 RRLSPTGTTSGDVRDALRPTPNWRIRRITRRK 63 >SB_19780| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 427 Score = 27.9 bits (59), Expect = 8.4 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +3 Query: 195 WWIATSRECQGRGRERTLTGTQHGSKRDRTITTQTW 302 +W TS E + ER TGT++G+ +TT TW Sbjct: 73 FWFRTSTELYLQIPERG-TGTKYGASTYSNLTTNTW 107 >SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 290 Score = 27.9 bits (59), Expect = 8.4 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Frame = +2 Query: 137 NLPERNSNANDRGERSVTALVDS------YQQRMSGSWQGKDANRNTTWQQERQNNNYTN 298 N N+N+ND + T + QQ ++ S D N + NNNY N Sbjct: 206 NNNSNNNNSNDHTATTTTPTAKTTPATVLVQQNINSSNNNNDQNNDHNNNNNNNNNNYNN 265 Query: 299 VETSH 313 +H Sbjct: 266 HNINH 270 >SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 302 Score = 27.9 bits (59), Expect = 8.4 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Frame = +3 Query: 51 PASLTADGAPGNDPPASRIDRQLYQNEPQTSPNGIQMQTTEARDL*PRWWIA-TSRECQG 227 P + A G PG PPA +Q Y P T +Q+ ++A L W + T+ C G Sbjct: 34 PPAYNAQGYPGTPPPAV-YSQQPYYGPPTTQQTFVQV--SKAAIL---WTTSNTTNICTG 87 Query: 228 RGRERTLTGTQHGSKRDRTI 287 + + QH + R++ Sbjct: 88 QYGNHNMDHQQHNNNLYRSV 107 >SB_39439| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 214 Score = 27.9 bits (59), Expect = 8.4 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +3 Query: 195 WWIATSRECQGRGRERTLTGTQHGSKRDRTITTQTW 302 +W TS E + ER TGT++G+ +TT TW Sbjct: 129 FWFRTSTELYLQIPERG-TGTRYGASTYSNLTTDTW 163 >SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) Length = 4277 Score = 27.9 bits (59), Expect = 8.4 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = +2 Query: 209 QQRMSGSWQGKDANRNTTWQQERQNNNYTNVETSH 313 Q R G+W + NRN Q R NNN V + Sbjct: 3034 QGRYRGAWSARHNNRNQYLQVFRGNNNRNTVRRQY 3068 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,976,388 Number of Sequences: 59808 Number of extensions: 241375 Number of successful extensions: 756 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 671 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 751 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1829596184 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -