Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0515
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2744|AAF48863.1| 1895|Drosophila melanogaster CG15040-P...    29   4.6  
AY113406-1|AAM29411.1|  485|Drosophila melanogaster RE12890p pro...    29   6.1  
AE014296-871|AAN11609.1|  485|Drosophila melanogaster CG32243-PA...    29   6.1  
AY075496-1|AAL68306.1|   92|Drosophila melanogaster RE48052p pro...    29   8.0  

>AE014298-2744|AAF48863.1| 1895|Drosophila melanogaster CG15040-PA
            protein.
          Length = 1895

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 137  NLPERNSNANDRGERSVTALVDSYQQRMSGSWQGKDANRNTTWQQERQNNN 289
            N+  +N N      ++    + S  Q    + Q K+ N+N   Q + QNNN
Sbjct: 1825 NIQSKNQNNIQSKNQNNQNNIQSKNQNNQNNMQSKNQNKNQNIQSKNQNNN 1875


>AY113406-1|AAM29411.1|  485|Drosophila melanogaster RE12890p
           protein.
          Length = 485

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 198 WIATSRECQGRGRERTLTGTQ--HGSKRDRTITTQTWRLRTSTRARLHTEVVEAVP 359
           ++   ++  GR   +T T TQ  H +K+D  IT ++ +  +S   +L   ++ +VP
Sbjct: 152 YLGVYKQTDGRVELKTYTTTQIWHPNKKDIPITPESLKKASSVTNKLRKIIIHSVP 207


>AE014296-871|AAN11609.1|  485|Drosophila melanogaster CG32243-PA
           protein.
          Length = 485

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 198 WIATSRECQGRGRERTLTGTQ--HGSKRDRTITTQTWRLRTSTRARLHTEVVEAVP 359
           ++   ++  GR   +T T TQ  H +K+D  IT ++ +  +S   +L   ++ +VP
Sbjct: 152 YLGVYKQTDGRVELKTYTTTQIWHPNKKDIPITPESLKKASSVTNKLRKIIIHSVP 207


>AY075496-1|AAL68306.1|   92|Drosophila melanogaster RE48052p
           protein.
          Length = 92

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 164 NDRGERSVTALVDSYQQRMSGSWQGKDANRNTTWQQERQNNN 289
           N++ + + TA     QQ    + + K      T QQ++QNNN
Sbjct: 19  NNKKDDTTTAKTKQQQQGQHNNSKNKATTARATQQQQKQNNN 60


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,732,733
Number of Sequences: 53049
Number of extensions: 356106
Number of successful extensions: 1657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1656
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)