Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0515
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    28   7.4  
AL117199-3|CAB55043.3|  868|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic ...    27   9.8  
AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic ...    27   9.8  

>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 57  SLTADGAPGNDPPASRIDRQLYQNEPQTSPNGIQMQTT 170
           S  A GA  +D P+S  D  +   EP  S N +  +T+
Sbjct: 571 SSEAPGASSSDFPSSTPDSSVSSEEPNASSNSVSTETS 608


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 57  SLTADGAPGNDPPASRIDRQLYQNEPQTSPNGIQMQTT 170
           S  A GA  +D P+S  D  +   EP  S N +  +T+
Sbjct: 571 SSEAPGASSSDFPSSTPDSSVSSEEPNASSNSVSTETS 608


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 57  SLTADGAPGNDPPASRIDRQLYQNEPQTSPNGIQMQTT 170
           S  A GA  +D P+S  D  +   EP  S N +  +T+
Sbjct: 571 SSEAPGASSSDFPSSTPDSSVSSEEPNASSNSVSTETS 608


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 57  SLTADGAPGNDPPASRIDRQLYQNEPQTSPNGIQMQTT 170
           S  A GA  +D P+S  D  +   EP  S N +  +T+
Sbjct: 571 SSEAPGASSSDFPSSTPDSSVSSEEPNASSNSVSTETS 608


>AL117199-3|CAB55043.3|  868|Caenorhabditis elegans Hypothetical
           protein Y43F11A.5 protein.
          Length = 868

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 75  APGNDPPASRIDRQLYQNEPQTSPN 149
           AP + PPA+ ++    +N P+TS N
Sbjct: 380 APSSSPPAALLNHSYCENPPKTSEN 404


>AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic
            glutamate receptorfamily protein 3, isoform a protein.
          Length = 1042

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 39   RRRGPASLTADGAPGNDPPASRIDRQLYQNEPQTSPNGIQMQTTEAR 179
            RRR P+S+   GA  N    + I  + Y +EP++S   I+  T ++R
Sbjct: 973  RRRRPSSVHTVGAVTNGSSVAHIPPRSYTDEPKSSM--IRQDTAKSR 1017


>AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic
            glutamate receptorfamily protein 3, isoform d protein.
          Length = 1044

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 39   RRRGPASLTADGAPGNDPPASRIDRQLYQNEPQTSPNGIQMQTTEAR 179
            RRR P+S+   GA  N    + I  + Y +EP++S   I+  T ++R
Sbjct: 975  RRRRPSSVHTVGAVTNGSSVAHIPPRSYTDEPKSSM--IRQDTAKSR 1019


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,644,431
Number of Sequences: 27780
Number of extensions: 165318
Number of successful extensions: 552
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)