Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0515
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.69 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   6.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.5  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +2

Query: 203 SYQQRMSGSWQGKDANRNTTWQQERQNNNYTNVETSHF 316
           S + ++  S   K  + N  +     NNNY N   +++
Sbjct: 309 SREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNY 346


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 203 SYQQRMSGSWQGKDANRNTTWQQERQNNNYTN 298
           S + ++  S   K  + N  ++    NNNY N
Sbjct: 76  SREPKIISSLSNKTIHNNNNYKYNYNNNNYNN 107


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 203 SYQQRMSGSWQGKDANRNTTWQQERQNNNYTN 298
           S + ++  S   K  + N  ++    NNNY N
Sbjct: 76  SREPKIISSLSNKTIHNNNNYKYNYNNNNYNN 107


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 203 SYQQRMSGSWQGKDANRNTTWQQERQNNNYTN 298
           S + ++  S   K  + N  ++    NNNY N
Sbjct: 76  SREPKIISSLSNKTIHNNNNYKYNYNNNNYNN 107


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 203 SYQQRMSGSWQGKDANRNTTWQQERQNNNYTN 298
           S + ++  S   K  + N  ++    NNNY N
Sbjct: 309 SREPKIISSLSNKTIHNNNNYKYNYNNNNYNN 340


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = +2

Query: 203 SYQQRMSGSWQGKDANRNTTWQQERQNNNYTN 298
           S + ++  S   +  + N  ++    NNNY N
Sbjct: 76  SREPKIISSLSNRTIHNNNNYKYNYNNNNYNN 107


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +3

Query: 114 QLYQNEPQTSPNGIQMQTTEARDL*PRW 197
           QL   EP   PN ++     +R +  +W
Sbjct: 901 QLLVQEPPQPPNSLETAMVASRSINVKW 928


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +3

Query: 114 QLYQNEPQTSPNGIQMQTTEARDL*PRW 197
           QL   EP   PN ++     +R +  +W
Sbjct: 897 QLLVQEPPQPPNSLETAMVASRSINVKW 924


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,216
Number of Sequences: 438
Number of extensions: 2553
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)