Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0515
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37210.1 68418.m04468 DC1 domain-containing protein contains ...    30   1.7  
At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ...    28   5.2  
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta...    27   9.0  
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta...    27   9.0  
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    27   9.0  

>At5g37210.1 68418.m04468 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 625

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 356 HRFHHLRMQPRSSRSAKSPRLCSYC 282
           H++HHLR+   + R     RLC  C
Sbjct: 373 HQYHHLRLDENTCREYDEDRLCQAC 397


>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1720

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 9   HQFRLHQVTERRRGPASLTADGAPGNDPPASRIDRQLYQNEPQTS 143
           H+    Q   RR+  A   +D   G+DP  S+ D Q +   P TS
Sbjct: 299 HEVAEIQEATRRKSSAVAPSDKPLGDDPILSQHDSQRFSTSPPTS 343


>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 33  TERRRGPASLTADGAPGNDPPASRIDRQLYQNEPQTSPNGIQ 158
           T R   PA  T   A   +PPA + +    +N P T  N  Q
Sbjct: 164 TPRNNPPAQKTNPPAQKTNPPAQKTNPPAQKNNPPTQKNNPQ 205


>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 33  TERRRGPASLTADGAPGNDPPASRIDRQLYQNEPQTSPNGIQ 158
           T R   PA  T   A   +PPA + +    +N P T  N  Q
Sbjct: 164 TPRNNPPAQKTNPPAQKTNPPAQKTNPPAQKNNPPTQKNNPQ 205


>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +3

Query: 18  RLHQVTERRRGPASLTADGAPGNDPPASRIDRQLYQNEPQTSPNGIQMQTTEARDL 185
           R  +  ER  GP S T +  P    P+SR  +Q     P+ SP   Q Q    R L
Sbjct: 301 RSPEFMERSPGPRSKTPEPQPTYFEPSSRTPKQ-RSKTPEPSPRIPQTQPMSHRSL 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,038,299
Number of Sequences: 28952
Number of extensions: 154383
Number of successful extensions: 490
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)