Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0514
         (509 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D5692F Cluster: PREDICTED: similar to CCR4-NOT t...    34   1.6  
UniRef50_UPI00006CFA0C Cluster: hypothetical protein TTHERM_0042...    34   1.6  
UniRef50_Q24CH7 Cluster: Putative uncharacterized protein; n=1; ...    33   2.8  
UniRef50_Q5DC37 Cluster: SJCHGC02147 protein; n=1; Schistosoma j...    33   3.8  
UniRef50_Q4UC86 Cluster: Putative uncharacterized protein; n=1; ...    32   8.7  

>UniRef50_UPI0000D5692F Cluster: PREDICTED: similar to CCR4-NOT
           transcription complex, subunit 10; n=1; Tribolium
           castaneum|Rep: PREDICTED: similar to CCR4-NOT
           transcription complex, subunit 10 - Tribolium castaneum
          Length = 663

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
 Frame = +2

Query: 59  ERQTHFENVLRINKSRNYSGGVAMLPRLFPALTDFTICIS*SV----SGEIRRTYFFE-- 220
           + Q + +  L   K  NY+G +  + +L     DF +  + ++      + R+   F+  
Sbjct: 17  QEQEYAQKALNEFKKNNYAGALQFINKLDNRTNDFKVAHNKALVEYCKSDFRKNETFQKN 76

Query: 221 -LSICEIRFVNIVSKFFLCIIDNRQFMTINMYFDFTNALYVLFRLYR 358
             SIC    ++ +     CI+   Q + +     +TNA+Y++ R+Y+
Sbjct: 77  LTSICNQIRLDKLDDVDQCIVHYNQAILLYHQQQYTNAIYIMDRVYK 123


>UniRef50_UPI00006CFA0C Cluster: hypothetical protein TTHERM_00421050;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00421050 - Tetrahymena thermophila SB210
          Length = 1894

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -3

Query: 405  CLLNSTNMTTTLIVYYRYNLNKTYNALVKSKYIFIVIN*RLSI-IHKKNFDTIFTKRISQ 229
            CL+ +  +   +++Y  YN +++Y   +K   +  +I   L +  +K   D +  K+I+Q
Sbjct: 1667 CLIQTLRLIIIIVIYQEYNKSQSYQQKIKIHQLLQLIESFLRLNSNKSKVDEVILKQINQ 1726

Query: 228  IDNSKK 211
             D +K+
Sbjct: 1727 NDITKR 1732


>UniRef50_Q24CH7 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 246

 Score = 33.5 bits (73), Expect = 2.8
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -2

Query: 409 VMSFEFYEHDNNTNRLLSIQPKQNVQCVSEIEIHIYCHKLTIIDN 275
           + SF    ++NN N LLS+Q  QN +    +++H++ H   + +N
Sbjct: 84  ISSFGGLNNNNNNNNLLSMQDLQNEEQKKPVKVHLWLHDDELKEN 128


>UniRef50_Q5DC37 Cluster: SJCHGC02147 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC02147 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 472

 Score = 33.1 bits (72), Expect = 3.8
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = -1

Query: 116 RNNFDFYLFLKHSRNAFVVRCLLD 45
           +N+F+FY  LK +RNAFV+  +LD
Sbjct: 246 QNDFEFYWMLKWARNAFVMMAMLD 269


>UniRef50_Q4UC86 Cluster: Putative uncharacterized protein; n=1;
           Theileria annulata|Rep: Putative uncharacterized protein
           - Theileria annulata
          Length = 1115

 Score = 31.9 bits (69), Expect = 8.7
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -3

Query: 372 LIVYYRYNL--NKTYNALVKSKYIFIVIN*RLSIIHKKNFDTIFTKR 238
           L+VY   NL  N+ YN    +  +++  N R+S I+KK+  +I TK+
Sbjct: 506 LLVYDIVNLRNNEKYNVFYTNHTVYVAANYRMSSIYKKSTRSITTKK 552


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 405,503,143
Number of Sequences: 1657284
Number of extensions: 7019371
Number of successful extensions: 17942
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17935
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30946432294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)