Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0514
         (509 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    25   0.52 
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   2.8  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   6.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   6.4  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 24.6 bits (51), Expect = 0.52
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -3

Query: 285 LSIIHKKNFDTIFTKRISQIDNS-KK*VRLISPETDYEMQIVKSVS 151
           +S +HKK+F   F   ++ +D +  K  + I+ ETDY + +  +++
Sbjct: 100 ISFMHKKSFKN-FVNNVAALDETLAKLGQYINYETDYYVCLAMTIT 144


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 99  LFILKTFSKCVCRSLPARPKPCNSNELLFVH 7
           LF+L TFS C+ +         NS+ L  V+
Sbjct: 238 LFVLSTFSICITQFYYCYDSGFNSDNLTDVY 268


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 185 VSGEIRRTYFFELSIC 232
           V  +IR  YF  L+IC
Sbjct: 434 VPSKIRDVYFLRLAIC 449


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 251 IVSKFFLCIIDNRQFM 298
           +V  FFLC+I  R F+
Sbjct: 295 VVLSFFLCLIPFRVFI 310


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,281
Number of Sequences: 336
Number of extensions: 2073
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12154132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)