Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0514
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    28   0.71 
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    27   1.6  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    26   2.9  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    26   3.8  
SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   6.6  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   8.7  

>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 379 NNTNRLLSIQPKQNVQCVSEIEIHIYCHKLTIID 278
           ++   LL   PK  + CV++IE+H +C +  ++D
Sbjct: 144 HHIQELLDSHPKI-IPCVNQIELHPFCSQQKVVD 176


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 181 VSLWRNQTNLLFRIIDL*NTFCKYSIKVFFMYYR*SSVYDNKY 309
           V ++ +  N + R+     T+ K S++V+FMYY   S+ + KY
Sbjct: 550 VIMFDSDPNFIRRVEVYKATYPKRSLRVYFMYYG-GSIEEQKY 591


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +2

Query: 374 VVVMFVEFKRHYLV 415
           V++ +VEFKRHYLV
Sbjct: 409 VLMPYVEFKRHYLV 422


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 212 FFELSICEIRFVNIVSKFFLCIIDNRQFMTINMYF 316
           F  L +C ++FVN V K  +  +D ++  +I  +F
Sbjct: 441 FCALEVCALQFVNGVHKSVVKHLDEKETWSIKYHF 475


>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 95

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 63 RSLPARPKPCNSNELLFV 10
          +S P+RPKP N+ + LF+
Sbjct: 36 KSTPSRPKPTNNQDDLFL 53


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 198 ISPETDYEMQIVKSVSAGNNRGNIATPP-E*FRLLFILKTFSKCVCRSLPARPKPCNS 28
           +SP  +   Q + S S+  +RG   TP      LL +L   S     S+P++ +P N+
Sbjct: 92  LSPSFNTSYQAIPSSSSNRSRGGPYTPSIRDDSLLALLSFSSNHRLHSMPSQLQPFNN 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,568
Number of Sequences: 5004
Number of extensions: 33275
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)