Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0514
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1041 - 10711362-10711428,10711571-10712262,10712622-107127...    29   2.9  
03_02_0928 + 12464325-12464498,12466494-12466679,12466929-124670...    28   3.8  
01_06_0544 + 30118208-30118417,30118959-30119063,30119179-301192...    28   5.0  

>12_01_1041 -
           10711362-10711428,10711571-10712262,10712622-10712777,
           10712885-10713957,10714422-10714524,10714694-10714876,
           10715007-10715099,10715379-10715564,10716530-10716793
          Length = 938

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -1

Query: 275 YIKKTLILYLQNVFHKSI 222
           Y  +TL+LY+ N+FHKS+
Sbjct: 220 YALETLVLYIFNIFHKSL 237


>03_02_0928 +
           12464325-12464498,12466494-12466679,12466929-12467021,
           12467212-12467394,12467506-12467608,12467695-12467865,
           12468086-12469084,12469178-12469254,12469485-12470337,
           12470878-12471000,12471526-12471878
          Length = 1104

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 275 YIKKTLILYLQNVFHKSI 222
           Y  +TLILY+ N+FHKS+
Sbjct: 190 YALETLILYIFNLFHKSL 207


>01_06_0544 +
           30118208-30118417,30118959-30119063,30119179-30119260,
           30119415-30121250,30121327-30121445,30121563-30122006
          Length = 931

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -3

Query: 282 SIIHKKNFDTIFTKRISQIDNSKK*VRLISPETDYEMQIVKSVSAGNNRGN 130
           S +H++ FD + TK+ S+ +   K   +   + D E    +S S G++ GN
Sbjct: 209 SPVHQEMFD-LLTKKTSEKEQKNKEKEVARAQVDIENSDCESGSEGSDHGN 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,333,868
Number of Sequences: 37544
Number of extensions: 173608
Number of successful extensions: 377
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)