Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0514
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12935| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_1141| Best HMM Match : PA (HMM E-Value=3.3e-11)                     27   9.0  

>SB_12935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 406 MSFEFYEHDNNTNRLLSIQPKQNVQCVSEIEIHIYCH 296
           M  E Y HDN+  R+ ++   + V C  +  + +Y H
Sbjct: 59  MRVEVYAHDNSEYRVSNLHASRGV-CTRQQRVEVYAH 94


>SB_1141| Best HMM Match : PA (HMM E-Value=3.3e-11)
          Length = 324

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 115 RRRCDVASIVSGAYGFHDLHLVVSLW 192
           R+ CDV+    GAYG H +    S W
Sbjct: 68  RKHCDVSVSKKGAYGTHSMQEDASGW 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,905,540
Number of Sequences: 59808
Number of extensions: 233152
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)