Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0514
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-7|AAF60797.1|  305|Caenorhabditis elegans Hypothetical ...    29   2.6  
U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like p...    27   7.9  
U41007-15|AAQ01538.1|  564|Caenorhabditis elegans Kinesin-like p...    27   7.9  
U41007-14|AAA82277.1|  690|Caenorhabditis elegans Kinesin-like p...    27   7.9  
AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like ...    27   7.9  
AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like ...    27   7.9  
AB023577-1|BAB82459.1|  690|Caenorhabditis elegans Kinesin like ...    27   7.9  

>AC024826-7|AAF60797.1|  305|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.4 protein.
          Length = 305

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 188 SGEIRRTYFFELSICEIRFVNIVSKFFLCIIDNRQFMTINM-YFDFT 325
           SGE+ +   ++L IC  ++  +   F +   +NR+ +T+   Y DF+
Sbjct: 183 SGEVEKVRTYDLHICYDKYYQVPRLFLMGYDENRRPLTVEQTYEDFS 229


>U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like
           protein protein 18 protein.
          Length = 932

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 14  KSNSLLLHGFGRAGNERQTHFENV-LRINKSRNYSGGVAMLPRLFPALTD 160
           K  S +L+    AG+ERQTH ++   R+ ++ N +  + +L R    L D
Sbjct: 223 KERSSILNLVDLAGSERQTHTKSSGDRLKEATNINSSLTVLGRCIRLLAD 272


>U41007-15|AAQ01538.1|  564|Caenorhabditis elegans Kinesin-like
           protein protein 10,isoform b protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 14  KSNSLLLHGFGRAGNERQTHFENV-LRINKSRNYSGGVAMLPRLFPALTD 160
           K  S +L+    AG+ERQTH ++   R+ ++ N +  + +L R    L D
Sbjct: 220 KERSSILNLVDLAGSERQTHTKSSGDRLKEATNINSSLTVLGRCIRLLAD 269


>U41007-14|AAA82277.1|  690|Caenorhabditis elegans Kinesin-like
           protein protein 10,isoform a protein.
          Length = 690

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 14  KSNSLLLHGFGRAGNERQTHFENV-LRINKSRNYSGGVAMLPRLFPALTD 160
           K  S +L+    AG+ERQTH ++   R+ ++ N +  + +L R    L D
Sbjct: 220 KERSSILNLVDLAGSERQTHTKSSGDRLKEATNINSSLTVLGRCIRLLAD 269


>AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like
           protein-18 protein.
          Length = 932

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 14  KSNSLLLHGFGRAGNERQTHFENV-LRINKSRNYSGGVAMLPRLFPALTD 160
           K  S +L+    AG+ERQTH ++   R+ ++ N +  + +L R    L D
Sbjct: 223 KERSSILNLVDLAGSERQTHTKSSGDRLKEATNINSSLTVLGRCIRLLAD 272


>AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like
           protein KLP-18 protein.
          Length = 930

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 14  KSNSLLLHGFGRAGNERQTHFENV-LRINKSRNYSGGVAMLPRLFPALTD 160
           K  S +L+    AG+ERQTH ++   R+ ++ N +  + +L R    L D
Sbjct: 221 KERSSILNLVDLAGSERQTHTKSSGDRLKEATNINSSLTVLGRCIRLLAD 270


>AB023577-1|BAB82459.1|  690|Caenorhabditis elegans Kinesin like
           protein protein.
          Length = 690

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 14  KSNSLLLHGFGRAGNERQTHFENV-LRINKSRNYSGGVAMLPRLFPALTD 160
           K  S +L+    AG+ERQTH ++   R+ ++ N +  + +L R    L D
Sbjct: 220 KERSSILNLVDLAGSERQTHTKSSGDRLKEATNINSSLTVLGRCIRLLAD 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,965,619
Number of Sequences: 27780
Number of extensions: 184479
Number of successful extensions: 395
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)