Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0514
         (509 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17010.1 68418.m01992 sugar transporter family protein simila...    28   3.2  
At5g48050.1 68418.m05937 hypothetical protein low similarity to ...    27   5.5  
At3g30390.1 68416.m03836 amino acid transporter family protein l...    27   9.7  

>At5g17010.1 68418.m01992 sugar transporter family protein similar
           to D-xylose proton-symporter [Lactobacillus brevis]
           GI:2895856; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 503

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 41  FGRAGNERQTHFENVLRINK-SRNYSGGVAMLPRLFPAL 154
           FG++  E     E +++ N    NYS   A+LP LFPAL
Sbjct: 18  FGKSSGEISPEREPLIKENHVPENYSVVAAILPFLFPAL 56


>At5g48050.1 68418.m05937 hypothetical protein low similarity to
           copia-like polyprotein [Arabidopsis thaliana]
           GI:13872712
          Length = 369

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 406 MSFEFYEHDNNTNRLLSIQPKQNVQCVSEIEIHIYCHKL 290
           +S E    DN   R L  + +     + ++ +H YC KL
Sbjct: 102 LSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQKL 140


>At3g30390.1 68416.m03836 amino acid transporter family protein low
           similarity to neuronal glutamine transporter [Rattus
           norvegicus] GI:6978016; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 460

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +2

Query: 113 SGGVAMLPRLFPALTDFT 166
           SGGVAM PRL P +TD T
Sbjct: 223 SGGVAM-PRLLPDVTDLT 239


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,879,504
Number of Sequences: 28952
Number of extensions: 156129
Number of successful extensions: 380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)