Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0513
(749 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 241 4e-64
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 35 0.061
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 31 0.76
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_42428| Best HMM Match : 7tm_1 (HMM E-Value=5.60519e-45) 30 2.3
SB_58724| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_29817| Best HMM Match : Keratin_B2 (HMM E-Value=6.3) 29 5.3
SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11) 28 9.3
>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 475
Score = 241 bits (590), Expect = 4e-64
Identities = 104/141 (73%), Positives = 122/141 (86%)
Frame = +1
Query: 277 VGSHITGGDLYGIVHENTLVKHRMLVPPKAKGTVTYIAPAGNYKVTDVVLETEFDGERQK 456
+G HITGGD+YG V ENT +KH +++ PKAKGT+TYIAP GNY + D +LE +FDGE+ K
Sbjct: 1 IGDHITGGDIYGYVQENTFIKHHIMLHPKAKGTITYIAPQGNYYIEDTILEIDFDGEKSK 60
Query: 457 YSMLQVWPVRQPRPVTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQA 636
+ MLQVWPVRQ RPVT+K+ ANHPLLTGQRVLD+LFPCVQGGTTAIPGAFGCGKTVISQ+
Sbjct: 61 HCMLQVWPVRQMRPVTDKMAANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQS 120
Query: 637 LSKYXNFDVIIYXGCGERXNQ 699
LSK+ N DVIIY GCGER N+
Sbjct: 121 LSKFSNSDVIIYVGCGERGNE 141
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 698 KMSEVLRDFPXLTXE 742
+MSEVLRDFP LT E
Sbjct: 141 EMSEVLRDFPELTVE 155
>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 238
Score = 35.1 bits (77), Expect = 0.061
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 529 LLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSK---YXNFDVIIYXGCGERXNQ 699
L TG +V+D + P +GG + G G GKTV+ Q L + + ++ G GER +
Sbjct: 3 LFTGIKVIDLIEPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGLSVFAGVGERTRE 62
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 16 IRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 171
+ LE D + V+ + GD V RTG + V +G +LG + D + P+
Sbjct: 3 LNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPI 54
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 499 VTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVIS 630
+ + P+LTG + +DSL P +G I G GKT I+
Sbjct: 74 IIPRTSVKEPMLTGIKAVDSLVPIGRGQRELIIGDRQTGKTAIA 117
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 31.5 bits (68), Expect = 0.76
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 529 LLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQAL 639
L TG +V+D L P +GG + G G GKTV+ L
Sbjct: 196 LETGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMEL 232
>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 31.5 bits (68), Expect = 0.76
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 13 IIRLEGDMATIQVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDG 156
++ + G A +QV+E TSG+ TG L + +LG +F+G
Sbjct: 53 VLEVSGSKAVVQVFEGTSGIDAKHTTCEFTGDILRTPVSEDMLGRVFNG 101
>SB_42428| Best HMM Match : 7tm_1 (HMM E-Value=5.60519e-45)
Length = 311
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +1
Query: 511 LPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYXNFDVI 666
LP NH ++T + + +LF C+ T F C T+ + + N+ +I
Sbjct: 10 LPGNHVIITTESITAALFTCILIILTLTANLFVCVATLRTNSARPLTNYFII 61
>SB_58724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 535 TGQRVLDSLFPCVQGG-TTAIPGAFGCGKTVISQALS 642
TG++VL S+ ++ G TAI G G GKT + LS
Sbjct: 149 TGKQVLQSVTGEIRAGEVTAIMGPSGAGKTTLLNTLS 185
>SB_29817| Best HMM Match : Keratin_B2 (HMM E-Value=6.3)
Length = 384
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 407 KSPTWCWRRSSTVSGRSTACCR 472
K +W + RS VSGRS ACCR
Sbjct: 242 KGVSWVFNRSR-VSGRSRACCR 262
>SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +1
Query: 556 SLFPCVQGGTTA-IPGAFGCG 615
S PC+ GG+ IPGAF CG
Sbjct: 39 SSMPCLNGGSCVEIPGAFKCG 59
>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
Length = 1692
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 155 PSKMEPKIPGPSSTDKGFPVRSTGSPTVTPEVSS 54
P+ P IP S G+P +TG PT P SS
Sbjct: 315 PTTGIPVIPQSSVLTPGYPSANTGYPTAIPGYSS 348
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.140 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,066,453
Number of Sequences: 59808
Number of extensions: 552613
Number of successful extensions: 1649
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1642
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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