Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0513
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   1.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   1.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +1

Query: 466 LQVWPVRQPRPVTEKLPANHPLLTG---QRVLDSL 561
           +Q W  RQP P+ E +    PLL     + +LD L
Sbjct: 484 IQQWTCRQPEPLIELIEHWMPLLPNWILENILDML 518


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 148 FDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 255
           +DG Q  L+ I+E+     +  G+++      V+W+
Sbjct: 172 YDGFQVDLRHIDEIRGKNVVDIGVDLSEFYTSVEWD 207


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 471 LQHAVLLPLTVELRLQHHVGDFVV 400
           L HA    L V   LQ H+G+F++
Sbjct: 195 LSHAEYSMLLVYFHLQRHMGNFLI 218


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 136 LGS-IFDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 255
           LGS  +DG +  L+ ++E + S  +  G+++      V+W+
Sbjct: 171 LGSWTYDGFKVDLRHMDEKSGSNVVDVGVDLSEFYMSVEWD 211


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 148 FDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 255
           ++G Q  LK + +   S  + KGI++      V+W+
Sbjct: 181 YNGAQVDLKHMKQEAGSNLVAKGIDLSDFYLSVEWD 216


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/36 (22%), Positives = 20/36 (55%)
 Frame = +1

Query: 148 FDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 255
           +DG +  L+ ++E + S  +  G+++      V+W+
Sbjct: 176 YDGFKVDLRHMDEKSGSNVVDVGVDLSEFYMSVEWD 211


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 127 PGILGSIFDGIQRPLKDINELTQSIY 204
           PGILG IF  +   L        S+Y
Sbjct: 338 PGILGGIFGALMAALATEASYDYSLY 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.140    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,661
Number of Sequences: 438
Number of extensions: 4886
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)