Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0513
(749 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 330 6e-91
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 40 0.002
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 40 0.002
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 40 0.002
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 37 0.016
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 37 0.016
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 37 0.016
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 37 0.016
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 37 0.016
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 32 0.35
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 32 0.35
At5g57450.2 68418.m07178 DNA repair family protein contains simi... 31 0.62
At5g57450.1 68418.m07177 DNA repair family protein contains simi... 31 0.62
At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR... 30 1.9
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 29 2.5
At5g58540.1 68418.m07330 protein kinase family protein contains ... 29 3.3
At4g21240.1 68417.m03071 F-box family protein contains F-box dom... 29 3.3
At3g57690.1 68416.m06427 arabinogalactan-protein, putative (AGP2... 29 3.3
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 28 5.8
At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger) fa... 28 5.8
At1g65800.1 68414.m07467 S-receptor protein kinase, putative sim... 28 7.6
At1g65790.1 68414.m07466 S-receptor protein kinase, putative sim... 28 7.6
At1g04940.1 68414.m00491 tic20 family protein similar to Tic20 (... 28 7.6
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 330 bits (811), Expect = 6e-91
Identities = 153/229 (66%), Positives = 179/229 (78%)
Frame = +1
Query: 13 IIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELT 192
IIRLEGD ATIQVYEET+G+TV DPVLRT KPLSVELGPGILG+IFDGIQRPLK I ++
Sbjct: 57 IIRLEGDSATIQVYEETAGLTVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIARIS 116
Query: 193 QSIYIPKGINVPSLAREVDWEFNPLNVKVGSHITGGDLYGIVHENTLVKHRMLVPPKAKG 372
+YIP+G++VP+L ++ WEF P G ITGGDLY V ENTL+ H + +PP A G
Sbjct: 117 GDVYIPRGVSVPALDKDCLWEFQPNKFVEGDTITGGDLYATVFENTLMNHLVALPPDAMG 176
Query: 373 TVTYIAPAGNYKVTDVVLETEFDGERQKYSMLQVWPVRQPRPVTEKLPANHPLLTGQRVL 552
+TYIAPAG Y + D V+E EF G ++ Y+MLQ WPVR PRPV KL A+ PLLTGQRVL
Sbjct: 177 KITYIAPAGQYSLKDTVIELEFQGIKKSYTMLQSWPVRTPRPVASKLAADTPLLTGQRVL 236
Query: 553 DSLFPCVQGGTTAIPGAFGCGKTVISQALSKYXNFDVIIYXGCGERXNQ 699
D+LFP V GGT AIPGAFGCGKTVISQALSKY N D ++Y GCGER N+
Sbjct: 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNE 285
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 61 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 234
T G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 141 TEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 198
Score = 35.5 bits (78), Expect = 0.038
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Frame = +1
Query: 445 ERQKYSMLQVWPVRQPRPVTEKLPANHPLL-TGQRVLDSLFPCVQGGTTAIPGAFGCGKT 621
ER + P+ + P L +L TG +V+D L P +GG + G G GKT
Sbjct: 179 ERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKT 238
Query: 622 V-----ISQALSKYXNFDVIIYXGCGERXNQ 699
V I+ + F V + G GER +
Sbjct: 239 VLIMELINNVAKAHGGFSV--FAGVGERTRE 267
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 61 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 234
T G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 144 TEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 201
Score = 35.5 bits (78), Expect = 0.038
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Frame = +1
Query: 445 ERQKYSMLQVWPVRQPRPVTEKLPANHPLL-TGQRVLDSLFPCVQGGTTAIPGAFGCGKT 621
ER + P+ + P L +L TG +V+D L P +GG + G G GKT
Sbjct: 182 ERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKT 241
Query: 622 V-----ISQALSKYXNFDVIIYXGCGERXNQ 699
V I+ + F V + G GER +
Sbjct: 242 VLIMELINNVAKAHGGFSV--FAGVGERTRE 270
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 61 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 234
T G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 141 TEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 198
Score = 35.5 bits (78), Expect = 0.038
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Frame = +1
Query: 445 ERQKYSMLQVWPVRQPRPVTEKLPANHPLL-TGQRVLDSLFPCVQGGTTAIPGAFGCGKT 621
ER + P+ + P L +L TG +V+D L P +GG + G G GKT
Sbjct: 179 ERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKT 238
Query: 622 V-----ISQALSKYXNFDVIIYXGCGERXNQ 699
V I+ + F V + G GER +
Sbjct: 239 VLIMELINNVAKAHGGFSV--FAGVGERTRE 267
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 IIRLEGDMATIQVYEETSGV-TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINEL 189
++ ++G+ A +QV+E TSG+ V TG+ L + +LG IF+G +P+ + +
Sbjct: 59 VLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 118
Query: 190 TQSIYI 207
Y+
Sbjct: 119 LPEAYL 124
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 IIRLEGDMATIQVYEETSGV-TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINEL 189
++ ++G+ A +QV+E TSG+ V TG+ L + +LG IF+G +P+ + +
Sbjct: 59 VLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 118
Query: 190 TQSIYI 207
Y+
Sbjct: 119 LPEAYL 124
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 IIRLEGDMATIQVYEETSGV-TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINEL 189
++ ++G+ A +QV+E TSG+ V TG+ L + +LG IF+G +P+ + +
Sbjct: 58 VLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
Query: 190 TQSIYI 207
Y+
Sbjct: 118 LPEAYL 123
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 IIRLEGDMATIQVYEETSGV-TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINEL 189
++ ++G+ A +QV+E TSG+ V TG+ L + +LG IF+G +P+ + +
Sbjct: 58 VLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
Query: 190 TQSIYI 207
Y+
Sbjct: 118 LPEAYL 123
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 IIRLEGDMATIQVYEETSGV-TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINEL 189
++ ++G+ A +QV+E TSG+ V TG+ L + +LG IF+G +P+ + +
Sbjct: 58 VLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
Query: 190 TQSIYI 207
Y+
Sbjct: 118 LPEAYL 123
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 32.3 bits (70), Expect = 0.35
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 155 PSKMEPKIPGPSSTDKG-FPVRSTGSPTVTPEVSSYTWMVAMSPS 24
P + P P PSS FPV + SPT+ P SSY M SPS
Sbjct: 204 PLPVSPPPPLPSSHPSSLFPVTTNSSPTIPPS-SSYPQMPNASPS 247
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 32.3 bits (70), Expect = 0.35
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 155 PSKMEPKIPGPSSTDKG-FPVRSTGSPTVTPEVSSYTWMVAMSPS 24
P + P P PSS FPV + SPT+ P SSY M SPS
Sbjct: 204 PLPVSPPPPLPSSHPSSLFPVTTNSSPTIPPS-SSYPQMPNASPS 247
>At5g57450.2 68418.m07178 DNA repair family protein contains
similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
(X-ray repair cross-complementing protein 3) [Homo
sapiens]
Length = 304
Score = 31.5 bits (68), Expect = 0.62
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +1
Query: 487 QPRPVTEKLPANHPLLTGQRVLDSLFPCVQGG-----TTAIPGAFGCGKTVISQALS 642
+P + + P N L TG +LD C++GG T I GCGKT + LS
Sbjct: 7 KPENLLRRSPTNRKLTTGCEILDG---CLRGGISCDSLTEIVAESGCGKTQLCLQLS 60
>At5g57450.1 68418.m07177 DNA repair family protein contains
similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
(X-ray repair cross-complementing protein 3) [Homo
sapiens]
Length = 304
Score = 31.5 bits (68), Expect = 0.62
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +1
Query: 487 QPRPVTEKLPANHPLLTGQRVLDSLFPCVQGG-----TTAIPGAFGCGKTVISQALS 642
+P + + P N L TG +LD C++GG T I GCGKT + LS
Sbjct: 7 KPENLLRRSPTNRKLTTGCEILDG---CLRGGISCDSLTEIVAESGCGKTQLCLQLS 60
>At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1059
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/34 (26%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +1
Query: 169 LKDINELTQSIYIPKGIN-VPSLAREVDWEFNPL 267
L+ + + ++ +Y+P+G+N +P R ++W++ P+
Sbjct: 613 LRVLRDRSEKLYLPQGLNYLPKKLRLIEWDYFPM 646
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 29.5 bits (63), Expect = 2.5
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Frame = +1
Query: 268 NVKVGSHITGGDLYGIVHENTLVKHRMLVPPKAKGTVTYIAPAGNYKVTDVV--LETEFD 441
N VG + GGD T +K LV K G++ + PAG + VV + D
Sbjct: 340 NENVGIVVFGGD--------TAIKEGDLV--KRTGSIVDV-PAGKAMLGRVVDAMGVPID 388
Query: 442 GERQKYSMLQVWPVRQPRPVTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKT 621
G+ Q + + E+ + P+ TG + +DSL P +G + G GKT
Sbjct: 389 GKGALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGDRQTGKT 448
Query: 622 VIS 630
I+
Sbjct: 449 TIA 451
>At5g58540.1 68418.m07330 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 484
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 626 MTVLPQPKAPGMAVVPPCTQGKSESSTRCPVSSGWLAGSFSVT 498
+T LP P AP + PP + G ++ S + + G + G F+V+
Sbjct: 114 ITPLPVPLAPAPSPSPPVSPGTTKKSPKVYMIVGIVGGVFTVS 156
>At4g21240.1 68417.m03071 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 256 FNPLNVKVGSHITGGDLYGIVHENTLVKHRMLVP-PKAKGTVTY 384
+NP + V + GD Y IV N ++ + +P PK TV Y
Sbjct: 125 YNPSSESVNGLVCFGDFYNIVVWNPSMRQHVTLPEPKPHSTVRY 168
>At3g57690.1 68416.m06427 arabinogalactan-protein, putative (AGP23)
similar to arabinogalactan protein [Arabidopsis
thaliana] gi|10880503|gb|AAG24281
Length = 61
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 542 SACSTRSSLACKEVPRPSPGPSVAAKLSSPKL 637
+A S + +A +EV P+PGP+ AA + P L
Sbjct: 13 AAASMTAVMAAEEVGAPAPGPASAASAALPAL 44
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 598 GAFGCGKTVISQALSKYXNFDV 663
G G GKT + A++KY NFDV
Sbjct: 206 GLPGAGKTSLVAAIAKYLNFDV 227
>At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 193 QSIYIPKGINVPSLAREVDWEFNPLNVKVGSHI 291
+S+ P+G N+PS R++D + N N +GS +
Sbjct: 163 RSVDPPRGRNIPSSRRKIDVDNNNYNHTLGSSV 195
>At1g65800.1 68414.m07467 S-receptor protein kinase, putative
similar to PIR|T05180|T05180 S-receptor kinase ARK3
precursor - [Arabidopsis thaliana]
Length = 847
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 629 EMTVLPQPKAPGMAVVPPCTQGKSESSTR 543
E T +PQPK PG V + S SST+
Sbjct: 801 ETTAIPQPKRPGFCVGRSSLEVDSSSSTQ 829
>At1g65790.1 68414.m07466 S-receptor protein kinase, putative
similar to similar to PIR|T05180|T05180 S-receptor
kinase ARK3 precursor - [Arabidopsis thaliana]
Length = 843
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 629 EMTVLPQPKAPGMAVVPPCTQGKSESSTR 543
E T +PQPK PG + + S SST+
Sbjct: 797 ETTAIPQPKRPGFCIGRSPLEADSSSSTQ 825
>At1g04940.1 68414.m00491 tic20 family protein similar to Tic20
(GI:3769673) [Pisum sativum]; contains TIGRFAM IGR00994:
chloroplast protein import component, Tic20 family
Length = 501
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 311 VLYMRTLWSSTGCWSRPKPREQLPISHR-PGTTKSPTWCWR 430
+++ + W + P+ + +P S R P TK P W WR
Sbjct: 73 LVFSASEWRTRKTLLTPRASKDVPSSFRFPPMTKKPQWWWR 113
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.140 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,611,223
Number of Sequences: 28952
Number of extensions: 380203
Number of successful extensions: 1247
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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