Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0511
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 32 0.10
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 2.2
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 2.2
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 27 2.9
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 27 2.9
SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory s... 26 5.0
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 6.6
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom... 26 6.6
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb... 26 6.6
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 8.7
>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 31.9 bits (69), Expect = 0.10
Identities = 27/112 (24%), Positives = 47/112 (41%)
Frame = -1
Query: 564 HLTLGVMSLMXNDERIQVTNLLTEARDTIVIPLLQGHVPLKIRLKGLSYMNDDPKAINVL 385
HLT+G++ + +++ ++ + L D I G + I LKG S+ P+ VL
Sbjct: 45 HLTIGMIPVKNDEDVLKCMDFLYNKEDEI--RKSYGEKKITIDLKGTSFFGKSPQEAKVL 102
Query: 384 YGRVQEEDWAAAGLIQKLGDALVDHFYRAGFMKKEFGRENIKLHVTFINTKY 229
Y D +Q + L F K+ + LH T +N++Y
Sbjct: 103 Y--ATPVDKHNGNDLQAFCEWLKVIFTEHNLFTKD--ARPLTLHCTLLNSRY 150
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 212 TSVVSLYFVFIKVTCNFIFSLPNSFFMNP 298
+ V+ YF+++K FIFSL N +NP
Sbjct: 462 SDAVATYFLYMKYVHPFIFSLCNIIPLNP 490
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 610 WTFSSCRIRHEGDLL*LMXFIRKYFTIYMYK 702
WT S +R E D L + F+ +Y +Y+YK
Sbjct: 452 WTVSGTPVRSEVDDLFGLLFLLRYSPMYLYK 482
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = +1
Query: 67 VWPHRVSLRKMYLCHFHNSEIIICELLEYLRSVERFSIVYGLILLRCIHVRRFSILCVYK 246
+WP R K +C +N IC +Y++ F++++ + IH + + ++ V
Sbjct: 1304 LWPLRTQAEKNEVCAVYNISTKIC--TKYIQFGNVFNLLHAGVSYIRIHQKGYGVVGVSN 1361
Query: 247 SY 252
Y
Sbjct: 1362 KY 1363
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = -3
Query: 298 WVHEKGIRKRKYKIARNFYKHKV*RNDGRGCTSTKSNHKQSKNVRRI*DTREVRRL*FRS 119
W RKR+ + + K V RN G ST ++K S+ + I + R+
Sbjct: 29 WTDRARDRKRQKRNSNESSKSTVKRNSGTNGAST--DYKNSQKEKVINPVFDPRKPAHEL 86
Query: 118 YGSDRDTSFATT 83
G+ RD +F T+
Sbjct: 87 KGNKRDNTFVTS 98
>SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory
subunit Suc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 113
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -1
Query: 456 HVPL-KIRLKGL--SYMNDDPKAINVLYGRVQEEDWAAAGLIQKLG 328
HV L K LK + Y N + + +L QEE+W G+ Q LG
Sbjct: 40 HVMLPKAMLKAIPTDYFNPETGTLRIL----QEEEWRGLGITQSLG 81
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -1
Query: 186 INNRK-TFDG-SEILEKFADYDFGVMEVTE 103
+N RK TFD SEI + + +YDF +E T+
Sbjct: 40 VNKRKRTFDEQSEITKDYIEYDFSKIEDTK 69
>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 227 LYFVFIKVTCNFIFSLPNSFF 289
LY++F+ V C F+ SL S F
Sbjct: 137 LYWIFVAVACIFVISLFYSLF 157
>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -1
Query: 282 EFGRENIKLHVTFINTKYRETTDVDAPQQNQTINNRKTFDGS 157
+F +N K H ++NT E D D I+ RK S
Sbjct: 3 QFSFQNCKTHTCYMNTSVNEHLDQDESFLRILIDTRKKIRSS 44
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +1
Query: 67 VWPHRVSLRKMYLCHFHNSEIIICELLEYLRSVERFSIVYGLILLRCIHVRRFSILCVYK 246
+WP R S +C N E IC +Y++ F++++ +I H + ++ V
Sbjct: 1337 LWPLRTSAELECVCSIFNIEKDIC--TKYVQFGHVFNLLHSIISYVRKHQGGYGVVAVSD 1394
Query: 247 SY 252
Y
Sbjct: 1395 KY 1396
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,484
Number of Sequences: 5004
Number of extensions: 69510
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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