Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0511
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0922 + 7278912-7279274,7281449-7281572,7282489-7282604,728... 58 8e-12
10_08_0694 - 19929918-19930292,19930633-19930866 29 5.2
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409... 28 6.9
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356... 28 6.9
06_03_0396 - 20357446-20357553,20357679-20357786,20357839-203583... 28 9.1
05_07_0064 + 27440520-27440942,27442387-27442998,27443109-274431... 28 9.1
>01_01_0922 +
7278912-7279274,7281449-7281572,7282489-7282604,
7282683-7282748,7283379-7283413,7283559-7283601,
7284325-7284362,7284448-7284555,7287195-7287252,
7287862-7288003,7288215-7288426,7288544-7288778,
7288874-7288941,7290329-7290602,7291137-7291249,
7291330-7291390,7292170-7292237,7292585-7292622,
7292699-7292888
Length = 783
Score = 58.4 bits (135), Expect(2) = 8e-12
Identities = 30/93 (32%), Positives = 51/93 (54%)
Frame = -1
Query: 336 KLGDALVDHFYRAGFMKKEFGRENIKLHVTFINTKYRETTDVDAPQQNQTINNRKTFDGS 157
+L + + D F ++G + + R+ +KLHVT +N ++R++ + NQ +FD
Sbjct: 683 QLREVITDAFVKSGLVLERDARQELKLHVTIMNVRHRKSK-----RWNQ---RNDSFDAR 734
Query: 156 EILEKFADYDFGVMEVTEIHLSQRHTMGPDGYY 58
I K+ ++D+G + EIHLSQR GYY
Sbjct: 735 NIFRKYGEHDWGEYLIPEIHLSQRFKFDERGYY 767
Score = 39.1 bits (87), Expect(2) = 4e-05
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = -1
Query: 327 DALVDHFYR-AGFMKKEFGRENIKLHVTFINTKYRETTDVDAPQQNQTINNRKTFDGSEI 151
+AL++H + + + +KLH T +N ++R+ DA +FD +I
Sbjct: 226 EALINHVFNISNLAPTSDEKRELKLHATVMNARFRKGYCPDA-----------SFDARKI 274
Query: 150 LEKFADYDFGVMEVTEIHLSQ 88
EK+A++++G + EIHL Q
Sbjct: 275 FEKYAEHEWGEYLIPEIHLCQ 295
Score = 29.5 bits (63), Expect(2) = 8e-12
Identities = 17/65 (26%), Positives = 38/65 (58%)
Frame = -1
Query: 624 RGECPNPTLEESLFIRSHKLHLTLGVMSLMXNDERIQVTNLLTEARDTIVIPLLQGHVPL 445
+G P+ +++S+FI+ HLT+ +M + N +RI + + ++ + V+ L+ P+
Sbjct: 623 KGSQPDFGIDKSIFIKPKTFHLTV-LMLKLWNKDRIAKASDVLQSVSSQVMEALENR-PI 680
Query: 444 KIRLK 430
I+L+
Sbjct: 681 SIQLR 685
Score = 25.8 bits (54), Expect(2) = 4e-05
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = -1
Query: 600 LEESLFIRSHKLHLTLGVMSLMXNDERIQVTNLLTEARDTIVIPLLQGHVPLKIRLKGL 424
++ES+F LHLT+ +M + + + +++L D ++ L + P+ I+L+GL
Sbjct: 168 IDESIFAIPESLHLTV-LMLELKGENIAKASSVLQSVSDKLMEAL--KNRPISIQLRGL 223
>10_08_0694 - 19929918-19930292,19930633-19930866
Length = 202
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 405 PKAINVLYGRVQEEDWAAAGLIQKLGDALVDHFYRAGFMKKEFGRENI 262
P I VL G V+E+ AAG + L + F + K+ FG +NI
Sbjct: 80 PPGIRVLRGSVEEDKDKAAGEMSTALQHLEEAFVKCSQGKQYFGGDNI 127
>09_03_0218 +
13539481-13540082,13540171-13540276,13540645-13540960,
13541187-13541263,13541269-13541895,13542783-13543112,
13543442-13543747,13543824-13543896,13544004-13544089,
13544219-13544396,13545311-13545756
Length = 1048
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 28 YFTRYYTGRLIISVWPHRVSLRKMYLCHFHNSEIIICELLEYLRSV 165
+F YY GR+ ++WP + L K + H E++ ++Y+ S+
Sbjct: 584 FFNGYYEGRMYQNLWPEMLKL-KDWPTSNHFEELLPSHGVKYMNSL 628
>01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,
3560853-3561491,3562154-3562450,3562553-3563407,
3564363-3564545,3565041-3565118,3565762-3565974,
3566075-3566238,3566357-3566445,3566761-3566891,
3566980-3567148,3567255-3567327,3567525-3567606,
3567677-3567808,3568743-3568818,3568965-3569065,
3569446-3569636,3569738-3569912,3570604-3570854,
3571327-3571603,3572184-3572267,3572496-3573206
Length = 1867
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 384 YGRVQEEDWAAAGLIQKLGDALVDHFYRAG 295
Y ++++ WA AGL+ LG+++V YR G
Sbjct: 1149 YVSLEDDPWAVAGLVLGLGNSVVS-LYRLG 1177
>06_03_0396 -
20357446-20357553,20357679-20357786,20357839-20358381,
20358478-20358669,20358787-20359017
Length = 393
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -3
Query: 238 HKV*RNDGRGCTSTKSNHKQSKNVRRI*DTREVRR 134
H++ R G C S HK+ +NV+ + D + ++
Sbjct: 329 HRLRRRPGNQCAGEISKHKKRRNVKYLFDNKRTKK 363
>05_07_0064 +
27440520-27440942,27442387-27442998,27443109-27443175,
27443271-27443362,27443493-27443708,27443869-27444006,
27444325-27444474
Length = 565
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 500 KRFVTCILSSLXIKLITPNVKCSL*DLM 583
KRFV C LS +KL+ +KC++ D++
Sbjct: 324 KRFVHCTLSLDDVKLVKNAMKCTVNDVL 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,544,624
Number of Sequences: 37544
Number of extensions: 414734
Number of successful extensions: 906
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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