Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0511
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1284| Best HMM Match : KH_1 (HMM E-Value=1.2e-07)                  100   3e-21
SB_36710| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_19080| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-08)                 29   5.3  
SB_40777| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               28   9.3  
SB_41500| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_1284| Best HMM Match : KH_1 (HMM E-Value=1.2e-07)
          Length = 333

 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
 Frame = -1

Query: 459 GHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDWAAAGLIQKLGDALVDHFYRAGFMKKE 280
           G  PL + LKG+ YMNDDP  ++VLY +VQE D      +QKL +AL++ F   G M++E
Sbjct: 192 GDDPLMVELKGVEYMNDDPTNVDVLYIKVQETD--GGNRLQKLANALMEAFVSCGLMRQE 249

Query: 279 FGRENIKLHVTFINTKYRETT---DVDAPQQNQTINNRKTFDGSEILEKFADYDFGVMEV 109
           +  + +KLH T +N+K R T+   D    + +     R +FD   I+  F D+ FG  +V
Sbjct: 250 Y--DKVKLHATIMNSKQRATSEPPDSKRRKPHGPQQKRVSFDARNIVTHFKDFSFGEYQV 307

Query: 108 TEIHLSQRHTMGPDGYY 58
             IH+SQR      G+Y
Sbjct: 308 DRIHVSQRGVFDSKGHY 324


>SB_36710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 276 GRENIKLHVTFINTKYRETTDVDAPQQNQTINNRKTFDG 160
           GR+NI      +N KY++TT +    Q+  +N  K FDG
Sbjct: 92  GRKNINN----VNNKYKKTTQLHFTYQDTKVNCTKKFDG 126


>SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
 Frame = +3

Query: 318 QEHHPASV*GRRPPNLLLVHVHTKH*S----PLD---HRSCTRDPSI*SSTVRGLVTAE* 476
           Q HH  S+    P N+++ H +    S    P++          PSI SS +  +++ + 
Sbjct: 356 QYHHHPSI-SSSPINIIIAHQYHHRPSISSSPINIIISHQYHHQPSISSSAINIIISHQY 414

Query: 477 QLYPSLRSKDLLLVF---FHHXPSNS*RPTSNVV 569
             +PS+ S  + ++    +HH PS S   T+ ++
Sbjct: 415 HHHPSISSSSINIIITHQYHHHPSISSSSTNIII 448


>SB_19080| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-08)
          Length = 281

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +1

Query: 67  VWPHRVSLRKMYLCHFHNSEIIICELLEYLRSVERFSIVYGLILLRCIHVRRFSILCV 240
           VWP+R  L   Y      +  II  LL    SVE F +V G+   R +H     ++CV
Sbjct: 21  VWPNRGELGPAY-----TTATIIEALLVIPTSVENFLVVAGIWKTRSLHSPANFLICV 73


>SB_40777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +1

Query: 97  MYLCHFHNSEIIICELLEYLRSVERFSIVYGLILLRCIHVRRFSILCVYKSYVQF 261
           ++LC+   S++ +   ++ L S        G++   C  V  FS+LC+Y + + F
Sbjct: 61  IFLCNLAISDLAVGVCIQPLCSAVMALQGLGVMAKHCTLVGAFSVLCIYFAGISF 115


>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 1243

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 13  FVSNLYFTRYYTGRLIISVWPHRVSLRKMYLC--HFHNSEIIICELLEYLRSVERFSIVY 186
           ++ N    +Y  GR+I    P R    K+  C  HF+N +   C   EY+   +++   Y
Sbjct: 487 YIYNPKTQKYCYGRII----PKRKHCVKLSRCGKHFYNPKQYRCANNEYIYDPKKYKFCY 542

Query: 187 GLIL 198
           G I+
Sbjct: 543 GRII 546


>SB_41500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -1

Query: 306 YRAGFMKKEFGRENIKLHVTFINTKYRE---TTDVDAPQQNQTINNRK 172
           Y    +K E   E  +LHV  I  +Y E   T DVD   Q   I+NRK
Sbjct: 127 YEIKEIKPELTVEEFELHVDPIIVEYFEHGDTEDVDLSLQELNISNRK 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,213,237
Number of Sequences: 59808
Number of extensions: 488514
Number of successful extensions: 1073
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)