Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0511
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80453-5|AAK31443.1| 378|Caenorhabditis elegans Hypothetical pr... 57 1e-08
Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z79753-3|CAB02088.1| 377|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF125954-5|AAD14708.2| 338|Caenorhabditis elegans Seven tm rece... 29 4.7
AF040643-1|AAB94960.1| 998|Caenorhabditis elegans Hypothetical ... 29 4.7
AF040659-5|AAO12389.1| 674|Caenorhabditis elegans Half transpor... 28 6.2
AF040659-4|AAK39394.1| 815|Caenorhabditis elegans Half transpor... 28 6.2
>U80453-5|AAK31443.1| 378|Caenorhabditis elegans Hypothetical
protein C23H3.3 protein.
Length = 378
Score = 57.2 bits (132), Expect = 1e-08
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Frame = -1
Query: 588 LFIRSHKLHLTLGVMSLMXNDERIQVTNLLTEARDTIVIPLLQGHVPLKIRLKGLSYMND 409
LF + +LHLTL V + +D +Q E + I ++ PL ++G+ MND
Sbjct: 215 LFTKPTRLHLTLSVARIF-DDMDLQKAVGAFEILEK-EIRQIKDSKPLIADIQGIDMMND 272
Query: 408 DPKAINVLYGRVQEEDWAAAGLIQKLGDALVDHFYRAGFMKK---EFGRENIKLHVTFIN 238
DP + VLY +V+ + +Q++ + + G K + G + +KLH+T +N
Sbjct: 273 DPSQVFVLYAKVKGDK------VQEVANYVNRRLIELGVSSKNEHDNGSDAVKLHMTLMN 326
Query: 237 TKYRETTDVDAPQQNQTINNRKTFDGSEILEKFADYDFGVMEVTEIH 97
++Y V +++ FD ++LE D FG E+ E++
Sbjct: 327 SRY-----VTQSEKSGKSKEAALFDAKQVLEDLKDSYFGTFELKEVN 368
>Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical
protein F43A11.3 protein.
Length = 319
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 109 HFHNSEIIICELLEYLRSVERFSIVYGLILLRCIHVRR--FSILCVYKSYVQFYIFSSEF 282
++ NS +I + ++ + + +I + R F+++C +++V FYI S F
Sbjct: 10 NYQNSVNVISAVFNFVFGIFGVICNFNIISIFLTSTERTSFNLICFSRAFVNFYILLSSF 69
Query: 283 LFH 291
LF+
Sbjct: 70 LFY 72
>Z79753-3|CAB02088.1| 377|Caenorhabditis elegans Hypothetical
protein F20G2.3 protein.
Length = 377
Score = 28.7 bits (61), Expect = 4.7
Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = -1
Query: 546 MSLMXNDERIQVTNLLTEARDTIVIPLLQGHVPLKIRLKGLSYMND--DPKAINVLYGRV 373
MS+ +D R+ + N L EA + P L LKG Y D PK IN L R
Sbjct: 1 MSISESD-RVAI-NELREAVKEHLTPYYDTDFNLLRWLKGHDYKMDVIKPKLINHLLFR- 57
Query: 372 QEEDWAAAGLIQKLGDALVDHFYRAG 295
+ DW L K D V H ++ G
Sbjct: 58 -KSDWDLDSLADKPRDHPVHHHWKTG 82
>AF125954-5|AAD14708.2| 338|Caenorhabditis elegans Seven tm
receptor protein 120 protein.
Length = 338
Score = 28.7 bits (61), Expect = 4.7
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Frame = +1
Query: 100 YLCHFHNSEIIICELLEYLRSVERFSIVYGLILLRCIHVRRFSILCVYKSYVQFYIFSSE 279
++ F+ S IC L R+S V LLR +H + L + ++ +F +
Sbjct: 90 FIAAFYCSTFGICVLFLSAHFFYRYSAVCSPRLLRHLHGPKVLRLLMPVFFLGALMFLNV 149
Query: 280 FLFHEPSSIKMIY--KSITQLL----YEAGG-RPIFFLYTSIQNINRLW 405
F EP+ KM Y +S+ + +E G +F++Y S ++ W
Sbjct: 150 TWFGEPTEFKMHYMRESLKREYGDDSFEVGQISSVFYIYNSTGSLEFFW 198
>AF040643-1|AAB94960.1| 998|Caenorhabditis elegans Hypothetical
protein F14D2.6 protein.
Length = 998
Score = 28.7 bits (61), Expect = 4.7
Identities = 27/105 (25%), Positives = 42/105 (40%)
Frame = +1
Query: 4 FFFFVSNLYFTRYYTGRLIISVWPHRVSLRKMYLCHFHNSEIIICELLEYLRSVERFSIV 183
F FF N YF R Y + WP S+ L N+++ +L Y +F
Sbjct: 495 FAFFDKNCYFNRTYVTSETMKSWPTNCSMVCGDLYFNANTDLTEDQLRTYFAKQNKFK-- 552
Query: 184 YGLILLRCIHVRRFSILCVYKSYVQFYIFSSEFLFHEPSSIKMIY 318
G +L+ H +F+ L Y+QF + + H P + Y
Sbjct: 553 -G--MLKFEHT-QFTSLTFLSRYLQF-SSAGILIAHNPKLTNISY 592
>AF040659-5|AAO12389.1| 674|Caenorhabditis elegans Half transporter
(pgp related)protein 9, isoform b protein.
Length = 674
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 1 FFFFFVSNL--YFTRYYTGRLIISVWPHRVSLRKMY 102
FFF F +L F YYTG ++ +V+ + S K++
Sbjct: 209 FFFLFCYSLSRVFIPYYTGEVVTAVFGDKASYEKLH 244
>AF040659-4|AAK39394.1| 815|Caenorhabditis elegans Half transporter
(pgp related)protein 9, isoform a protein.
Length = 815
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 1 FFFFFVSNL--YFTRYYTGRLIISVWPHRVSLRKMY 102
FFF F +L F YYTG ++ +V+ + S K++
Sbjct: 209 FFFLFCYSLSRVFIPYYTGEVVTAVFGDKASYEKLH 244
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,385,039
Number of Sequences: 27780
Number of extensions: 383512
Number of successful extensions: 830
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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