Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0511
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.3  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/58 (20%), Positives = 28/58 (48%)
 Frame = -1

Query: 531 NDERIQVTNLLTEARDTIVIPLLQGHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDW 358
           +D+ I    LL+   D  ++P +QG + + + +  LS  + D  ++      + ++ W
Sbjct: 60  SDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQW 117


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/58 (20%), Positives = 28/58 (48%)
 Frame = -1

Query: 531 NDERIQVTNLLTEARDTIVIPLLQGHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDW 358
           +D+ I    LL+   D  ++P +QG + + + +  LS  + D  ++      + ++ W
Sbjct: 60  SDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQW 117


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/58 (20%), Positives = 28/58 (48%)
 Frame = -1

Query: 531 NDERIQVTNLLTEARDTIVIPLLQGHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDW 358
           +D+ I    LL+   D  ++P +QG + + + +  LS  + D  ++      + ++ W
Sbjct: 60  SDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQW 117


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 423 RDPSI*SSTVRGLVTAE*QLYPSLRSKDLL 512
           RDPS+   T    +     L+PSL S+D L
Sbjct: 399 RDPSLFVETSASELVESSVLFPSLDSRDEL 428


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +1

Query: 169 RFSIVYGLILLRC 207
           +FS++YG +++ C
Sbjct: 702 QFSVLYGFVIIEC 714


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 4   FFFFVSNLYFTRYYTGRL 57
           F+FF+      RYY  RL
Sbjct: 257 FYFFLHKQVLNRYYLERL 274


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 342 IQKLGDALVDHFYRAGF 292
           I KL  +++DH Y  GF
Sbjct: 653 IVKLRGSIIDHSYGGGF 669


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 342 IQKLGDALVDHFYRAGF 292
           I KL  +++DH Y  GF
Sbjct: 691 IVKLRGSIIDHSYGGGF 707


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 4   FFFFVSNLYFTRYYTGRL 57
           F+FF+      RYY  RL
Sbjct: 257 FYFFLHKQVLNRYYLERL 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,378
Number of Sequences: 438
Number of extensions: 5156
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)