Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0511
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16230.1 68416.m02048 expressed protein similar to ASC-1 comp...    85   6e-17
At3g16220.1 68416.m02047 expressed protein similar to CGI-18 pro...    81   1e-15
At4g11655.1 68417.m01863 transmembrane protein, putative contain...    28   5.8  

>At3g16230.1 68416.m02048 expressed protein similar to ASC-1 complex
           subunit P50 (GI:12061189) [Homo sapiens]
          Length = 449

 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 55/182 (30%), Positives = 94/182 (51%)
 Frame = -1

Query: 600 LEESLFIRSHKLHLTLGVMSLMXNDERIQVTNLLTEARDTIVIPLLQGHVPLKIRLKGLS 421
           +E+S+FI+    HLT+ VM  + N +R+     + ++    V+  L    P+ IRLKGL 
Sbjct: 266 IEKSIFIKPSTFHLTV-VMLKLWNKDRVNAACDVLKSIFPSVMDALDNK-PVFIRLKGLD 323

Query: 420 YMNDDPKAINVLYGRVQEEDWAAAGLIQKLGDALVDHFYRAGFMKKEFGRENIKLHVTFI 241
            M        VLY  V+E      G + +    + D F +AG + ++  ++++KLHVT +
Sbjct: 324 CMRGPLDKTRVLYAPVEEI--GDEGRLLRACQVITDAFVKAGLVLEKDAKQSLKLHVTVM 381

Query: 240 NTKYRETTDVDAPQQNQTINNRKTFDGSEILEKFADYDFGVMEVTEIHLSQRHTMGPDGY 61
           N ++R+       ++       +TFD  EI ++F + D+G   + E HLSQR     +GY
Sbjct: 382 NARHRK-------RRKNNKKKMETFDAREIHKQFGNEDWGEYLIQEAHLSQRFVFDQNGY 434

Query: 60  YQ 55
           Y+
Sbjct: 435 YR 436


>At3g16220.1 68416.m02047 expressed protein similar to CGI-18
           protein GB:AAD27727 [Homo sapiens]
          Length = 257

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 52/181 (28%), Positives = 85/181 (46%)
 Frame = -1

Query: 600 LEESLFIRSHKLHLTLGVMSLMXNDERIQVTNLLTEARDTIVIPLLQGHVPLKIRLKGLS 421
           +E+S+F+     HLT+ ++ L  N+  ++  N+L      +   L     P+ IRL+GL 
Sbjct: 81  IEKSIFVTPKTFHLTVVMLKLENNESVVKAQNILQSIFSNVRQALKNR--PVFIRLRGLE 138

Query: 420 YMNDDPKAINVLYGRVQEEDWAAAGLIQKLGDALVDHFYRAGFMKKEFGRENIKLHVTFI 241
            M+       VLY  V+E      G +      ++D F   GF  K+  +  +KLH T +
Sbjct: 139 CMSGSLDKTRVLYAPVEEV--GREGRLLNACHVIIDAFENVGFAGKD-AKSRLKLHATLM 195

Query: 240 NTKYRETTDVDAPQQNQTINNRKTFDGSEILEKFADYDFGVMEVTEIHLSQRHTMGPDGY 61
           N  YR+                 TFD  EI ++F + D+G   + E H+SQR+   P+GY
Sbjct: 196 NASYRKDKS----------KKMDTFDAREIHKEFENKDWGTYLIREAHISQRYKYDPNGY 245

Query: 60  Y 58
           +
Sbjct: 246 F 246


>At4g11655.1 68417.m01863 transmembrane protein, putative contains 4
           transmembrane spanning domains, PMID:11152613
          Length = 208

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = +1

Query: 316 YKSITQLLYEAGGRPIFFLYTSIQNINRLWIIVHVRETLQSDLQRYVAL*QRNDNCIPRF 495
           + S  +LLY  G   I F+YTS+Q    +  I H    +   L  Y++           F
Sbjct: 93  FASYPELLYCFGVAVIGFVYTSLQTFKGVCDITHRGVLISEPLSDYISF---------IF 143

Query: 496 GQKICYL 516
            Q ICYL
Sbjct: 144 DQVICYL 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,170,274
Number of Sequences: 28952
Number of extensions: 352677
Number of successful extensions: 847
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)