Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0509
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             257   8e-69
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)       159   3e-39
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        58   1e-08
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          44   1e-04
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               34   0.14 
SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)         29   3.0  
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_57776| Best HMM Match : EB (HMM E-Value=2.9)                        29   5.3  
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)           29   5.3  
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   7.0  
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  257 bits (629), Expect = 8e-69
 Identities = 117/212 (55%), Positives = 149/212 (70%)
 Frame = +3

Query: 99  NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 278
           NPL EKRP+NF IG  IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88

Query: 279 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 458
           + +   LFK+L KYRPET                         +P  ++ G N +T LVE
Sbjct: 89  RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 148

Query: 459 KKXAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 638
            K AQLVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K  T L +T V 
Sbjct: 149 NKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVR 208

Query: 639 SGDRAXXSKVVEAIKTNFNERYEELXKXWGXG 734
             D+   + ++E++KTN+NER++E+ K WG G
Sbjct: 209 QEDKNSLNNLIESVKTNYNERFDEIRKHWGGG 240


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score =  159 bits (385), Expect = 3e-39
 Identities = 73/146 (50%), Positives = 95/146 (65%)
 Frame = +3

Query: 297 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKXAQL 476
           LFK+L KYRPET                         +P  ++ G N +T LVE K AQL
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 477 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRAX 656
           VVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K  T L +T V   D+  
Sbjct: 64  VVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNS 123

Query: 657 XSKVVEAIKTNFNERYEELXKXWGXG 734
            + ++E++KTN+NER++E+ K WG G
Sbjct: 124 LNNLIESVKTNYNERFDEIRKHWGGG 149


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +3

Query: 420 IRSGTNTVTKLVEKKXAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 593
           +R G N  TK + +  A+ +V+A D +P+E++L LP LC    VPY  V+ K+ LG    
Sbjct: 94  LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATG 153

Query: 594 VHRKTCTCLALTN 632
           V R    C    N
Sbjct: 154 VTRPVIACAVTVN 166


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +3

Query: 408 RPNTIRSGTNTVTKLVEKKXAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 575
           +  T+R G   V K + K     V++A DV PI+++  +P +C    +PY  V  K
Sbjct: 95  KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150


>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +3

Query: 429 GTNTVTKLVEKKXAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 587
           G +   K ++K+ A L +++++ D    V  + ALC + G+P   V    +LG
Sbjct: 41  GLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93


>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
          Length = 1898

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/67 (23%), Positives = 34/67 (50%)
 Frame = +3

Query: 528  ALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRAXXSKVVEAIKTNFNERYE 707
            A C++    + +++GK +  AL+ +KT   L +  V    R   + VV+   ++ +E+Y 
Sbjct: 1206 ASCKRCRDEFTVIRGKEK--ALLGKKTAEQLKVLGVGPETRESVNAVVKGSDSDIHEQYS 1263

Query: 708  ELXKXWG 728
            ++    G
Sbjct: 1264 DIFSGVG 1270


>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 92  DRESSLREEAKELCYWSGHSANS*LVQ-ICKMAQVYPHPAPEGCTSASSESAPSDQPI 262
           DR  ++ E  KE+CYW GH   + + + + +  +          T+++SE   S +P+
Sbjct: 137 DRRKNMEERHKEMCYW-GHKFETYVTKLVSERGKRETVMGASTSTASTSEGGASAKPV 193


>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
          Length = 669

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 92  DRESSLREEAKELCYWSGHSANS*LVQ-ICKMAQVYPHPAPEGCTSASSESAPSDQPI 262
           DR  ++ E  KE+CYW GH   + + + + +  +          T++ SE   S +P+
Sbjct: 187 DRRKNMEERHKEMCYW-GHKFETYVTKLVSERGKRETVMGASTSTASKSEGGASAKPV 243


>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
          Length = 437

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 664 FXKXARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 563
           F     + +S   R +H H+ RCTSAP    P T
Sbjct: 61  FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 410 PLWWRLIFLGNLSFSSFPQPLFPG 339
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1957

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 564  VKGKSRLGALVHRKTCTCLALTNVESGDRAXXSKVVEAIKTNFNERYEELXKXWG 728
            VKGK+ LG    +KT   L +  V    R   S VVEA  ++  E+Y ++    G
Sbjct: 1092 VKGKALLG----KKTAEQLKVLRVGPETRESVSAVVEASDSDIREQYSDIFSGVG 1142


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 221 TSASSESAPSDQPIYPDTG 277
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 168 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 317
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K        +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,558,172
Number of Sequences: 59808
Number of extensions: 424375
Number of successful extensions: 1144
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)