Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0509
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 256 9e-69
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 253 1e-67
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 53 2e-07
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 3e-07
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 3e-07
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 4e-07
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 47 2e-05
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 36 0.022
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 36 0.022
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 35 0.066
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 35 0.066
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 35 0.066
At2g31760.1 68415.m03878 zinc finger protein-related contains lo... 33 0.27
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 4.4
At5g07010.1 68418.m00794 sulfotransferase family protein similar... 28 5.8
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 28 5.8
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 256 bits (628), Expect = 9e-69
Identities = 121/212 (57%), Positives = 151/212 (71%)
Frame = +3
Query: 99 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 278
NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 80
Query: 279 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 458
K A LFK+L KYRPE +P ++ G N VT L+E
Sbjct: 81 KNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESK-KPIVVKYGLNHVTYLIE 139
Query: 459 KKXAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 638
+ AQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V+
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVK 199
Query: 639 SGDRAXXSKVVEAIKTNFNERYEELXKXWGXG 734
+ D+ SK++EAIK NFN++YEE K WG G
Sbjct: 200 NEDKLEFSKILEAIKANFNDKYEEYRKKWGGG 231
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 253 bits (619), Expect = 1e-67
Identities = 121/212 (57%), Positives = 149/212 (70%)
Frame = +3
Query: 99 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 278
NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 79
Query: 279 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 458
K A LFKIL KYRPE +P ++ G N VT L+E
Sbjct: 80 KNLATSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAESK-KPIVVKYGLNHVTYLIE 138
Query: 459 KKXAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 638
+ AQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT L LT V+
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVK 198
Query: 639 SGDRAXXSKVVEAIKTNFNERYEELXKXWGXG 734
+ D+ SK++EAIK NFN++YEE K WG G
Sbjct: 199 NEDKLEFSKILEAIKANFNDKYEEYRKKWGGG 230
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/98 (26%), Positives = 48/98 (48%)
Frame = +3
Query: 420 IRSGTNTVTKLVEKKXAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 599
++ G V K + + L VIA ++ PI+++ LP LC + GVPY V K L
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGA 110
Query: 600 RKTCTCLALTNVESGDRAXXSKVVEAIKTNFNERYEEL 713
K TC L ++ ++ + +KT++ + +++
Sbjct: 111 TKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDI 148
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +3
Query: 420 IRSGTNTVTKLVEKKXAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 593
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 594 VHRKTCTCLALTNVESGDRAXXSKVVEAIK 683
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +3
Query: 420 IRSGTNTVTKLVEKKXAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 593
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 594 VHRKTCTCLALTNVESGDRAXXSKVVEAIK 683
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +3
Query: 420 IRSGTNTVTKLVEKKXAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 593
++ G N TK + + ++ +V+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACD 94
Query: 594 VHRKTCTCLALTNVESGDRAXXSKVVEAIK 683
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +3
Query: 438 TVTKLVEKKXAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTC 611
+ TK + + ++ VV+A D +P+E++L LP L VPY V K LG V R
Sbjct: 73 SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI 132
Query: 612 TCLALTNVESGDRAXXSKVVEAIK 683
C +N S ++ + +AI+
Sbjct: 133 ACSVTSNEASQLKSQIQHLKDAIE 156
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 36.3 bits (80), Expect = 0.022
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3
Query: 429 GTNTVTKLVEKKXAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 587
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 36.3 bits (80), Expect = 0.022
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3
Query: 429 GTNTVTKLVEKKXAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 587
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 34.7 bits (76), Expect = 0.066
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 429 GTNTVTKLVEKKXAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 587
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 34.7 bits (76), Expect = 0.066
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 429 GTNTVTKLVEKKXAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 587
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 34.7 bits (76), Expect = 0.066
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 429 GTNTVTKLVEKKXAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 587
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g31760.1 68415.m03878 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 514
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -2
Query: 551 YTHFTA*RWQEENQLNRINIMSDDHKLRXLLLDQLGDCVC 432
YTH+ RW E NQ +R+ MSD K + + L QL D C
Sbjct: 340 YTHYYV-RWVE-NQSSRLKAMSDLEKFQSVQLKQLSDNQC 377
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 425 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 267
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 359
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 497 NIMSDDHKLRXLLLDQLGDCVCAGSDGVGPLWWRLI 390
NI S+ + +LLDQ D C G G GP W ++
Sbjct: 205 NIKSES--VSPVLLDQAFDLYCRGVIGFGPFWEHML 238
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 527 WQEENQLNRINIMSDDHKLRXLLLDQLGDCVCAGSDGVGPLWWR 396
W+ EN + ++ HKL L L G+ + +GS +G WR
Sbjct: 327 WERENNMKNGGVLKG-HKLAVLCLVAAGNLMFSGSADLGIRVWR 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,000,718
Number of Sequences: 28952
Number of extensions: 300852
Number of successful extensions: 880
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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