Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0507
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 159 5e-40
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 94 2e-20
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 80 3e-16
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 74 2e-14
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 62 6e-11
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 62 8e-11
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 58 1e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 58 1e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 58 2e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 57 2e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 56 4e-09
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 52 6e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 49 6e-07
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 46 4e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 45 1e-05
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 44 2e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 44 2e-05
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 43 4e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 36 0.004
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 36 0.006
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 35 0.010
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.041
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.041
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 30 0.29
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 0.51
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.0
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 3.6
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.7
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.2
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 159 bits (385), Expect = 5e-40
Identities = 77/161 (47%), Positives = 102/161 (63%)
Frame = +3
Query: 237 NMRRPDWDXXSLQPFNKNFYDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 416
N+ + DW +L PF K+FY H V S EV EYR + E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 417 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 596
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ 187
Query: 597 PPIRXGDGPDCFGLGRLPES*HNKFSKLLPDFGHTSYVRNT 719
P + GDGP L E + + FG +S +RNT
Sbjct: 188 PLLSPGDGPIVLVLAPTREL-AVQIQQECTKFGKSSRIRNT 227
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 94.3 bits (224), Expect = 2e-20
Identities = 43/125 (34%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Frame = +3
Query: 252 DWDXXSLQPFNKNFYDPHPTVLKXSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPD 428
D + + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 429 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 608
+ ++GY++PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLK 487
Query: 609 XGDGP 623
G+GP
Sbjct: 488 TGEGP 492
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 80.2 bits (189), Expect = 3e-16
Identities = 32/86 (37%), Positives = 58/86 (67%)
Frame = +3
Query: 348 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 527
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 528 VAQTGSGKTLAYILPAIVHINNQPPI 605
+A+TGSGKT A+I+P I+ I+ PP+
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPL 317
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 641 APTRELAQQIQ 673
APTRELAQQIQ
Sbjct: 332 APTRELAQQIQ 342
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 73.7 bits (173), Expect = 2e-14
Identities = 34/87 (39%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
Frame = +3
Query: 339 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 509
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 510 GKNLVGVAQTGSGKTLAYILPAIVHIN 590
G+++VG+A+TGSGKT+A+ +PA+ ++N
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLN 228
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 62.5 bits (145), Expect = 6e-11
Identities = 26/65 (40%), Positives = 43/65 (66%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 584
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 585 INNQP 599
+ N P
Sbjct: 108 LWNNP 112
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 62.1 bits (144), Expect = 8e-11
Identities = 28/72 (38%), Positives = 42/72 (58%)
Frame = +3
Query: 363 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 542
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 543 SGKTLAYILPAI 578
SGKT ++ P +
Sbjct: 217 SGKTAGFLFPIL 228
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 58.4 bits (135), Expect = 1e-09
Identities = 27/82 (32%), Positives = 51/82 (62%)
Frame = +3
Query: 333 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 512
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 513 KNLVGVAQTGSGKTLAYILPAI 578
++++G A+TGSGKTLA+++P I
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTI 148
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 58.0 bits (134), Expect = 1e-09
Identities = 23/63 (36%), Positives = 41/63 (65%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 584
F+ + + + G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 585 INN 593
+ +
Sbjct: 131 LKS 133
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 57.6 bits (133), Expect = 2e-09
Identities = 27/72 (37%), Positives = 40/72 (55%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 584
F+ N +++ V G+K+ TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 585 INNQPPIRXGDG 620
+ + G G
Sbjct: 63 VTRRDTDETGLG 74
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/65 (38%), Positives = 42/65 (64%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 584
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 585 INNQP 599
+ +P
Sbjct: 321 LLYRP 325
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 56.4 bits (130), Expect = 4e-09
Identities = 25/77 (32%), Positives = 46/77 (59%)
Frame = +3
Query: 375 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 554
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 555 LAYILPAIVHINNQPPI 605
AY++P + + Q I
Sbjct: 66 AAYLIPILELLLKQKQI 82
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 52.4 bits (120), Expect = 6e-08
Identities = 20/64 (31%), Positives = 42/64 (65%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 584
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 585 INNQ 596
++ +
Sbjct: 106 VDTK 109
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 49.2 bits (112), Expect = 6e-07
Identities = 26/83 (31%), Positives = 43/83 (51%)
Frame = +3
Query: 339 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 518
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 519 LVGVAQTGSGKTLAYILPAIVHI 587
++G A+TGSGKTLA+I+P I ++
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENL 101
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 46.4 bits (105), Expect = 4e-06
Identities = 20/71 (28%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = +3
Query: 396 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYIL 569
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++G +Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 570 PAIVHINNQPP 602
+ ++ P
Sbjct: 173 TMLSRVDASVP 183
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +3
Query: 456 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 584
G+ +P PIQ+ P A G +++G A TGSGKTLA+ +P + H
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEH 183
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 44.4 bits (100), Expect = 2e-05
Identities = 23/84 (27%), Positives = 45/84 (53%)
Frame = +3
Query: 339 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 518
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 519 LVGVAQTGSGKTLAYILPAIVHIN 590
++ AQ+G+GKT + + + I+
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSID 84
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 44.0 bits (99), Expect = 2e-05
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Frame = +3
Query: 300 PHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ-QGVKTMGYKEPTP 476
P P++ + +++ K + V+G +NP+ EE FP+ + + +K E T
Sbjct: 18 PQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEGILCENLKKQNITECTT 71
Query: 477 IQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 602
IQ P S ++L+ A TGSGKT+AY+ P + + P
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP 113
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 43.2 bits (97), Expect = 4e-05
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 584
F + ++ +K + EPT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 585 INNQP 599
+ P
Sbjct: 69 WSKDP 73
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 36.3 bits (80), Expect = 0.004
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 453 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQP 599
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLP 207
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 35.9 bits (79), Expect = 0.006
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 372 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSG 548
S ++ P + E A+ + + G+++ TP+Q + + + +N V A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 549 KTLAYILPAIVHINNQPP 602
KTLA++L A + P
Sbjct: 89 KTLAFLLVAFKDVLKGKP 106
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 35.1 bits (77), Expect = 0.010
Identities = 15/65 (23%), Positives = 35/65 (53%)
Frame = +3
Query: 396 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 575
I F++ N + +G+ G++ P+ IQ + + ++++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 576 IVHIN 590
+ I+
Sbjct: 78 LQKID 82
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +2
Query: 641 APTRELAQQIQQV 679
APTRELAQQIQ+V
Sbjct: 94 APTRELAQQIQKV 106
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 33.1 bits (72), Expect = 0.041
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 516 NLVGVAQTGSGKTLAYILPAIVHINNQPP 602
NL+ V TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 33.1 bits (72), Expect = 0.041
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 516 NLVGVAQTGSGKTLAYILPAIVHINNQPP 602
NL+ V TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.3 bits (65), Expect = 0.29
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 504 MSGKNLVGVAQTGSGKTLAYILPAIV 581
+SGK++ + TG GK+L Y LPA++
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI 557
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 29.5 bits (63), Expect = 0.51
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 495 PIAMSGKNLVGVAQTGSGKTLAYILPAI 578
P+ G ++ A TGSGKTL+Y++P +
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIV 195
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 453 MGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 593
+ Y+ IQ+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 315 LKXSPYEVEEYRNKHEVTVS 374
+ PYE++ YRNKH +S
Sbjct: 249 MSIKPYEIQVYRNKHWFPIS 268
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 327 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 458
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 456 PLSLHLVAHNQENL--LLQSIE 397
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,503
Number of Sequences: 5004
Number of extensions: 55261
Number of successful extensions: 160
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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