Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0507
(720 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 3e-28
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 86 3e-17
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 82 5e-16
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 71 9e-13
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 69 5e-12
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 7e-12
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 59 4e-09
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 58 5e-09
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 52 5e-07
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 50 1e-06
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 49 3e-06
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 49 3e-06
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 49 3e-06
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 48 8e-06
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 47 1e-05
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 44 9e-05
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 40 0.002
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 40 0.003
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 38 0.011
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.044
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 34 0.10
SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19) 33 0.31
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 33 0.31
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 30 1.6
SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32) 29 3.8
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 3.8
SB_19261| Best HMM Match : Keratin_B2 (HMM E-Value=3) 28 6.6
SB_27105| Best HMM Match : GDC-P (HMM E-Value=0) 28 8.8
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 122 bits (294), Expect = 3e-28
Identities = 52/125 (41%), Positives = 79/125 (63%)
Frame = +3
Query: 249 PDWDXXSLQPFNKNFYDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 428
P+ +PFNKNFY+ HP + K S E+++ R K + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 429 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 608
+ ++ + Y +PT IQ Q PIA+SG++++G+A+TGSGKT A++ PA+VHI +QP ++
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQ 586
Query: 609 XGDGP 623
GDGP
Sbjct: 587 VGDGP 591
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 85.8 bits (203), Expect = 3e-17
Identities = 41/115 (35%), Positives = 65/115 (56%)
Frame = +3
Query: 279 FNKNFYDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 458
F ++YD + V + S V+E R K+ + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 459 YKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRXGDGP 623
++ PTPIQ Q MSG++++G+A+TGSGKTLAY LP + + + P GD P
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTP 146
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 81.8 bits (193), Expect = 5e-16
Identities = 36/94 (38%), Positives = 57/94 (60%)
Frame = +3
Query: 345 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 524
+R ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 525 GVAQTGSGKTLAYILPAIVHINNQPPIRXGDGPD 626
GVA+TGSGKT A+ +P +V I P I + D
Sbjct: 143 GVAETGSGKTAAFAIPLLVWIMGLPKIERDNDAD 176
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 70.9 bits (166), Expect = 9e-13
Identities = 32/88 (36%), Positives = 52/88 (59%)
Frame = +3
Query: 294 YDPHPTVLKXSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 473
Y HPT+ + +V++ R+K E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 474 PIQAQGWPIAMSGKNLVGVAQTGSGKTL 557
PIQ Q P+ +SG++++ A TGSGK L
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGKLL 248
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 68.5 bits (160), Expect = 5e-12
Identities = 40/98 (40%), Positives = 53/98 (54%)
Frame = +3
Query: 330 YEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 509
+EV+ YR ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 60 HEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ------- 112
Query: 510 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRXGDGP 623
+ILP IVHIN+QP ++ GDGP
Sbjct: 113 -----------------FILPGIVHINHQPLLQPGDGP 133
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 644 PTRELAQQIQQVAAGFWTH 700
PTRELAQQ+Q+VA H
Sbjct: 140 PTRELAQQVQEVAYSVGKH 158
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 68.1 bits (159), Expect = 7e-12
Identities = 35/85 (41%), Positives = 52/85 (61%)
Frame = +3
Query: 339 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 518
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 750
Query: 519 LVGVAQTGSGKTLAYILPAIVHINN 593
++ AQTGSGKT A++LP + + N
Sbjct: 751 VMACAQTGSGKTAAFLLPVMTSMMN 775
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/76 (40%), Positives = 43/76 (56%)
Frame = +3
Query: 369 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSG 548
VSG I F E F + + + GY+ PTP+Q PI M+G++L+ AQTGSG
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSG 528
Query: 549 KTLAYILPAIVHINNQ 596
KT AY+LP + + Q
Sbjct: 529 KTAAYMLPVLTSLIKQ 544
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +3
Query: 273 QPFNKNFYDPHPTVLKXSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 449
QPF K+FY P + K +P E +E+R E + V G P++ + + + +K
Sbjct: 62 QPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILDVLK 121
Query: 450 TMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 539
Y++PTPIQAQ P+ MSG++++ + T
Sbjct: 122 KNSYEKPTPIQAQAIPVIMSGRDMIAIVMT 151
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 58.8 bits (136), Expect = 4e-09
Identities = 25/61 (40%), Positives = 40/61 (65%)
Frame = +3
Query: 396 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 575
++ F + G+ G+ PT IQ QG P+A+SG++++G A+TGSGKTLA+++P
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPI 108
Query: 576 I 578
I
Sbjct: 109 I 109
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 58.4 bits (135), Expect = 5e-09
Identities = 31/72 (43%), Positives = 44/72 (61%)
Frame = +3
Query: 339 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 518
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 173
Query: 519 LVGVAQTGSGKT 554
++ AQTGSGKT
Sbjct: 174 VMACAQTGSGKT 185
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/69 (37%), Positives = 40/69 (57%)
Frame = +3
Query: 396 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 575
I FE+ + + + V GYK+PTP+Q PI ++L+ AQTGSGKT A+++P
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPI 933
Query: 576 IVHINNQPP 602
+ I + P
Sbjct: 934 LSRIYMEGP 942
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 52.0 bits (119), Expect = 5e-07
Identities = 22/54 (40%), Positives = 35/54 (64%)
Frame = +3
Query: 438 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP 599
+ V +G+ PTPIQA P+A+ GK++ A TG+GKT A++LP + + +P
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP 76
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/75 (36%), Positives = 39/75 (52%)
Frame = +3
Query: 360 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 539
EV + G P + F +Y + +G PT +Q WP + G+++ GVA
Sbjct: 178 EVLIQGESAPRPFLTMNNSTFYEYGPR----LGVTVPTSLQKHMWPSLLRGRDVAGVAIE 233
Query: 540 GSGKTLAYILPAIVH 584
GSGK LAY+LP I+H
Sbjct: 234 GSGKRLAYLLP-IIH 247
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +3
Query: 438 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 578
QG+K MG+ T IQ + + G++L+G A+TGSGKTLA+++P +
Sbjct: 585 QGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVV 631
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +3
Query: 333 EVEEYRNKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 500
++ +R++ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 501 AMSGKNLVG 527
G G
Sbjct: 197 MAHGPKKSG 205
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/58 (32%), Positives = 38/58 (65%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 578
FE+ + G+ G+ +P+PIQ + P+A++G++++ A+ G+GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLL 106
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/58 (32%), Positives = 38/58 (65%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 578
FE+ + G+ G+ +P+PIQ + P+A++G++++ A+ G+GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLL 106
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Frame = +3
Query: 423 PDYVQQGVKTMGYKEPTPIQAQGWPIAMS-GKNLVGVAQTGSGKTLAYILPAIVHI 587
PD + + + G+ +PTPIQ+ P A+ ++++G A+TGSGKTLA+ +P I HI
Sbjct: 139 PD-ILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHI 193
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 48.0 bits (109), Expect = 8e-06
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Frame = +3
Query: 354 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--N 518
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++ N
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVN 144
Query: 519 LVGVAQTGSGKTLAYILPAIVHINNQPP 602
++ +Q+G+GKT A++L + ++ P
Sbjct: 145 MIAQSQSGTGKTAAFVLTMLSRVDATKP 172
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +3
Query: 453 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP 599
MG K+PT IQ P + G++ +G A+TGSGKT A+ LP + + + P
Sbjct: 25 MGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDP 73
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 44.4 bits (100), Expect = 9e-05
Identities = 20/52 (38%), Positives = 35/52 (67%)
Frame = +3
Query: 423 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 578
P V++ +K MG +P PIQ + P S K+L+ ++TG+GK+L ++LP++
Sbjct: 169 PKLVEK-LKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV 219
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/50 (30%), Positives = 33/50 (66%)
Frame = +3
Query: 438 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 587
+G+ G+++P+PIQ + P+ G +L+ A++G+GKT + + A+ ++
Sbjct: 26 RGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALENV 75
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +3
Query: 426 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPI 605
D V + + + +PT IQ P + +++ AQTGSGKTLAY+ P +VH +
Sbjct: 387 DDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAP-LVHRLREDEE 445
Query: 606 RXG 614
R G
Sbjct: 446 RHG 448
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/26 (53%), Positives = 22/26 (84%)
Frame = +3
Query: 495 PIAMSGKNLVGVAQTGSGKTLAYILP 572
P+ M GK++V +A+TGSGKT A+++P
Sbjct: 313 PLVMDGKDVVAMARTGSGKTAAFLIP 338
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +3
Query: 474 PIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 578
PIQA + G++++G A+TG+GKTL++ LP +
Sbjct: 98 PIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLV 132
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 35.5 bits (78), Expect = 0.044
Identities = 14/50 (28%), Positives = 31/50 (62%)
Frame = +3
Query: 447 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 596
+T G+++P+ IQ + + G++++ AQ+G+GKT + + + I+ Q
Sbjct: 13 ETEGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQ 62
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 34.3 bits (75), Expect = 0.10
Identities = 25/92 (27%), Positives = 42/92 (45%)
Frame = +3
Query: 324 SPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIA 503
+P + E +N TV+ + P+ E P V + + +G+ Q Q
Sbjct: 481 APEDDEFLKNLSLDTVAQMAAGIPV----ETETPPEVYKALGQLGFSSFRAGQEQAVMRI 536
Query: 504 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQP 599
+SG + + V TG+GK+L Y LPA ++ P
Sbjct: 537 LSGMSSLVVLSTGAGKSLCYQLPAYMYHKRSP 568
>SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19)
Length = 304
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 456 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 581
GY + P+Q Q ++ K+ + + TG+GKT+ Y +PA++
Sbjct: 136 GYIDFRPMQRQAIDTLLAEKDSLILLPTGAGKTICYAIPALL 177
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +3
Query: 513 KNLVGVAQTGSGKTLAYILPAIVHINNQP 599
K+++G+A+TGSGKT A+ LP + + + P
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNP 30
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 32.3 bits (70), Expect = 0.41
Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Frame = +2
Query: 641 APTRELAQQIQQV--AAGFWTHILC 709
APTRELAQQIQ+V A G + H+ C
Sbjct: 166 APTRELAQQIQKVVLALGDYMHVKC 190
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 381 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 494
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 327 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 458
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)
Length = 651
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 504 MSGKNLVGVAQTGSGKTLAYILPAIV 581
MSG + + + TG GK+L + LPA+V
Sbjct: 102 MSGVDCILIMPTGGGKSLCFQLPAVV 127
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 339 EEYRNK-HEVTVSGVEVHNPIQYFEEANFPDY 431
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_19261| Best HMM Match : Keratin_B2 (HMM E-Value=3)
Length = 333
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +3
Query: 456 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRXGDG 620
G+ P+ Q S V A T T AY+ P +V PP+R G G
Sbjct: 231 GFSPTGPVNGQPTNSTSSSPFSVTSADTIINPTAAYVRPGMVPREIIPPLRDGSG 285
>SB_27105| Best HMM Match : GDC-P (HMM E-Value=0)
Length = 767
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 604 IGGWLFMCTIAGKM*ANVLPEPVWATP-TKFFPDIAIGQ 491
IG + C + + N+L P W TP T + P++A G+
Sbjct: 49 IGMGYYSCHVPTTILRNILENPGWTTPYTPYQPELAQGR 87
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,746,512
Number of Sequences: 59808
Number of extensions: 424393
Number of successful extensions: 921
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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